Pedobacter cryoconitis: AY601_3468
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Entry
AY601_3468 CDS
T04341
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AY601_3468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_3468
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AY601_3468
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
GerE
Sigma70_r4
Sigma70_r2
HTH_10
PF0610-like_N
HTH_5
HTH_24
Sigma70_ECF
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AMQ00334
UniProt:
A0A127VGA3
LinkDB
All DBs
Position
4126582..4127166
Genome browser
AA seq
194 aa
AA seq
DB search
MKYKSLSDNSLVDLLKDSDGLAFKEIYTRYWMGIYKAAYVKVYHKELAEELTQNLFADLW
RRRESIAVNALDCYLFGSLKYSIINHYKSQLVKEKYQDHVNGQQSPITSSTEDLVLVNDL
SKALNQGIALLPKKTGEVFKLSRIDNRSTKEISQQLNISEKAVEYHITQSLKSMRFHLKE
YLFLLLTFVFFHKI
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgaaatataaaagtctctctgataattcgttggtagatctgttaaaagatagcgatggg
ctggcttttaaagaaatctatacgcggtattggatggggatttacaaagcggcttatgtc
aaggtataccataaagaattagcagaagaactgacgcagaatctctttgcagatctttgg
aggagaagagaaagtattgcggttaacgcgctggactgctatttattcggaagcctgaaa
tacagtattattaatcattacaaatcgcagctggttaaagaaaagtatcaggaccatgtg
aatggccagcaatcccctattaccagcagcaccgaagatctcgtgctggtcaatgatctt
tctaaagcgctgaaccagggaattgcactcctgccaaaaaagacaggggaagtatttaaa
ttaagcaggattgataaccgttctaccaaagagatttcccagcagttgaatatttcagaa
aaagcagtggaataccacattacacaatcgctgaaaagtatgcgctttcatttaaaggag
tacctgtttttattactcactttcgttttctttcataaaatttaa
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integrated database retrieval system
