Pedobacter cryoconitis: AY601_3746
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Entry
AY601_3746 CDS
T04341
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AY601_3746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_3746
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AY601_3746
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
HTH_23
GerE
HTH_24
HTH_40
HTH_Mga
HTH_28
HTH_10
HTH_17
Xre-like-HTH
MSC
HTH_3
DUF2774
HTH_5
DUF8517
HTH_26
Motif
Other DBs
NCBI-ProteinID:
AMQ00606
UniProt:
A0A127VH00
LinkDB
All DBs
Position
4434685..4435317
Genome browser
AA seq
210 aa
AA seq
DB search
MKPDLSPLWTKVCVEDDVKAFEVLYYLLFNKLIKFCIYYVGRKEVAEEIISDIFVRCWEN
RKAETVILNLETYLFTAVRNQSLKYIKKNANIHLVEIEPANEFQLMDNTNPEKQLENKEL
HHKLDEAIDKLPQQARIIFKLIKENGMKYKEVAEILEISPRTVQTQLFRAIDKLRISLKA
YQHIYTKNKPDNNTIDLTVLIFFLHIFHFL
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
ttgaaacctgatttatctcctttatggacaaaggtttgcgtggaggatgatgttaaagct
tttgaagttttatattatcttttatttaacaagctgattaaattctgcatctattatgta
ggcagaaaagaagtagccgaagagattatctccgacatctttgtgagatgctgggaaaac
agaaaagcagaaacagttattctgaacctggagacctatctttttacagctgtcaggaac
caatccctgaagtatattaagaaaaatgccaacattcatttagtagaaattgaacctgct
aatgaattccagttgatggacaacaccaatcctgaaaaacagttggaaaataaagaattg
caccataaattagatgaggcaattgacaagcttccgcagcaggcccggatcatctttaag
ctcattaaagaaaacgggatgaaatacaaagaagttgcggaaattctggagatttcacca
agaacagtacaaacacaattattcagggcaatagataaattaaggataagtcttaaagct
tatcagcatatttatacaaaaaataaacctgacaataatacaatcgatttaacagtttta
atattttttttacatatttttcatttcttgtaa
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