Pedobacter cryoconitis: AY601_3982
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Entry
AY601_3982 CDS
T04341
Name
(GenBank) Transcription elongation factor NusA
KO
K02600
transcription termination/antitermination protein NusA
Organism
pcm
Pedobacter cryoconitis
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_3982
03009 Ribosome biogenesis [BR:
pcm03009
]
AY601_3982
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AY601_3982
Ribosome biogenesis [BR:
pcm03009
]
Prokaryotic type
rRNA transcription factors
AY601_3982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
S1
KH_NusA_C
KH_2
KH_1
Ssb-like_OB
Motif
Other DBs
NCBI-ProteinID:
AMQ00835
UniProt:
A0A127VHN0
LinkDB
All DBs
Position
complement(4697382..4698617)
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AA seq
411 aa
AA seq
DB search
MSNINLIDSFQEFKEFKNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIW
RTRKVMEDGFSEDDDLEIELAEVKQLDADMEVGDDYIEQITLESFGRRAILAARQTLVSK
VLELEKDEIFKKYKDRVGEIVTGEVYQVWKKETLVLDDEGNELIMPKTEQIPADYFKKGD
TVRAVILKVDMMNSTPKIIISRIAPEFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVA
VESYDDRIDPVGACVGMKGSRIHGIVRELKNENIDVINFTNNVSLYITRALSPAKITSIK
LDDVTKHASVYLKPDQVSLAIGRGGHNIKLAGKLTGYEIDVYREAGEEDEDVDIEEFSDE
IDSWIIDELKAIGCDTARSVLALSVDELVKRTDLEEETIKEVISILQSEFE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatattaatttaatcgattcatttcaagaattcaaagagttcaagaacatcgac
cgtcctacggtgatcagtgtgctggaagaagtatttcgtagcatgttacgtaagaaatat
ggtactgatgagaattgtgatgtaattgttaaccctgataatggtgatttagagatctgg
cgtacaagaaaagtaatggaagacggcttttctgaagatgatgatcttgaaatcgaattg
gcagaggttaagcagttagatgcagatatggaagttggagacgactacattgagcagatt
actttagagagttttggaagaagagctattttagctgcacgtcagacactggtatctaaa
gtacttgaattagagaaagacgagatctttaagaaatataaggacagagttggagaaatc
gtaacaggagaagtttaccaggtttggaaaaaagaaacgttagtactggatgatgaaggt
aatgagttgatcatgcctaaaactgaacagataccagctgattatttcaaaaaaggtgat
actgtacgtgcggtaatcttaaaggtggatatgatgaatagcaccccaaagattatcatt
tcaagaattgctcctgagtttttacaacgtttgtttgaaattgaggttcctgagatcttt
gatggtttaattacaattaagaaaattgttcgtgaaccaggagaacgtgctaaagtagct
gtggaatcttatgatgacagaattgacccggtgggtgcttgtgttggtatgaagggttca
cgtattcatggaatcgtgagagaacttaaaaatgagaatattgatgtaatcaatttcact
aataatgtttctctttatatcacaagagctttgagccctgctaaaatcacttcaatcaaa
ttggatgatgtaactaaacatgcttcggtttacctgaagcctgatcaggtttctcttgca
attggccgtggtggacataatattaaacttgccggtaaattaactggttacgaaattgat
gtttaccgtgaagctggtgaagaagatgaagatgtggatatcgaagaattctcagatgaa
atcgatagctggatcattgacgaattgaaggcaattggttgtgatactgcaagaagcgta
ctagcgctgtcagtagacgaattagtaaaaagaactgatctggaggaagaaactattaaa
gaagttatcagtatattacagtcagaatttgaataa
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