KEGG   Pedobacter cryoconitis: AY601_4297
Entry
AY601_4297        CDS       T04341                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pcm  Pedobacter cryoconitis
Pathway
pcm03030  DNA replication
pcm03410  Base excision repair
pcm03420  Nucleotide excision repair
pcm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pcm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AY601_4297
   03410 Base excision repair
    AY601_4297
   03420 Nucleotide excision repair
    AY601_4297
   03440 Homologous recombination
    AY601_4297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcm03032]
    AY601_4297
   03400 DNA repair and recombination proteins [BR:pcm03400]
    AY601_4297
Enzymes [BR:pcm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AY601_4297
DNA replication proteins [BR:pcm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AY601_4297
DNA repair and recombination proteins [BR:pcm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     AY601_4297
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AY601_4297
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2 DUF3913 HHH_5
Other DBs
NCBI-ProteinID: AMQ01146
UniProt: A0A127VII8
LinkDB
Position
5012079..5014892
AA seq 937 aa
MKKLFLLDGMALIYRAHFALSKSPRFTSTGINTSAVMGFANTLMEVLKKEKPSHIAVVFD
TDAPTERHTDFVAYKAHRESMPEDLSAALPYIFKLIEGFNIPVITKDGFEADDIIGTLAK
EAEKAGFTVFCMTPDKDFAQLVSDHIFIYKPARMGNDMEIIGVPEVLAKWEIENVLQVID
ILGLWGDAVDNIPGIPGIGEKTAKLLIKQYGSMENIIANAEQLKGKQRENVIAFADQGMI
SKKLATIILNVPVEFDEQSLLLEEPSRELLEPLFAELEFRTLGKRVFGDGFSIGDAKANV
SQQTDLFGNSVDEPVSKTKTFEQLPNLFEQPPVGKTIADTKPDYQLVDTAEKRKVLIDLL
LQQESVSFDTETTGIDANRAELVGLSFCIEVGKAWYIPVSADQAEAQAVVDEFRPVLENE
KIGKTGQNIKYDILVLKWYGVDIKGKLFDTMLAHYLIDPDTRHNMDVLSENYLGYTPISI
TTLIGPKGKNQGTMRDVPVESVVDYAAEDADVTLQLAHVFKPILKDLNAEELITNIENPL
VYVLADMEKEGVRIDMETLISYSKELEVDIRRFEQSVYDKAGVVFNLASPKQLGEVLFDK
LKLDPKAKKTKTGQYQTGEDVLSALAHKSDIVKDILDFRQLQKLKSTYVDALPLLVNPKT
GRVHTSYNQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIARDTDHVLLSADYSQIEL
RIIADISKEENMLDAFSKGIDIHTATAAKVYGITIEEVDSTQRRNAKAVNFGIIYGQSAF
GLSQNLGIPRKEAAEMIEQYFAQYPGIKRYMTDTMNFARENGFVETMMGRRRYLRDINSA
NQTVRGFAERNAINAPIQGSAADMIKIAMIHIHQDIKDQKLQSKMTMQVHDELVFDVLKS
EVDAMKKIITHRMKTAIKTTVPIEIEIGEGNTWLEAH
NT seq 2814 nt   +upstreamnt  +downstreamnt
atgaagaaacttttcctgcttgacggtatggcgttgatctacagagcgcattttgcatta
agtaaaagccctagatttacctctaccggtatcaacacctccgcagtaatgggctttgcc
aatactttaatggaagtccttaaaaaggaaaaaccaagtcatattgcagtagtttttgat
acagatgcacctacagaaagacatactgattttgttgcttacaaggcacatcgcgaaagc
atgccagaagatttatctgcagctttaccttatatctttaaattgattgaaggctttaac
atccctgtgattacaaaggatggttttgaagcagatgatattataggaacattggctaaa
gaagccgaaaaagcaggatttacagttttctgtatgacgcctgataaagattttgcacag
ttggtttctgatcatatatttatttacaaaccagccagaatgggcaatgacatggagatc
atcggtgttcctgaagtccttgcgaaatgggaaatagaaaatgtattacaggtcattgat
attcttggtttatggggagatgctgtcgataatattcctggaataccgggaataggggag
aaaactgcaaaactgctgattaaacaatatggttctatggagaacattattgccaatgca
gaacagttgaagggtaaacagcgtgaaaacgtaattgcatttgctgatcaggggatgatc
tctaaaaaattagcgactattattctgaatgttcctgttgagtttgatgaacaatcttta
ttgttagaagaaccaagccgggaattattagagcctctttttgcggaattagagttccgt
actttaggtaaaagagtattcggagacggtttcagtatcggggacgcgaaagcaaacgta
tcacagcaaactgatttattcggtaattcggtagatgaaccagttagtaaaaccaaaacc
tttgaacaattacctaatttatttgagcagcctccggtaggaaaaacgattgcagatact
aaacctgattatcagctggtagataccgcagagaaaagaaaagtattaattgatttactg
cttcagcaggaaagtgtctcatttgatacggaaacgaccggcatagatgcgaacagagca
gaacttgttgggctttctttctgtattgaggttggaaaggcatggtatattcctgtttcg
gcagatcaggcagaagcgcaagcagttgttgatgaattcagaccggtattggaaaatgag
aaaatagggaagaccggccagaacattaaatatgatattttagtgcttaaatggtatggc
gtagatatcaaaggaaaattatttgataccatgctggcacattacctgatagatcctgat
acacgtcacaatatggatgtgctttcagaaaactacctgggttacacaccaatctctatt
actacgctgattggcccgaaaggaaaaaaccagggaacgatgagagatgtgcctgtagaa
agtgtagtagattacgcagcagaagatgctgacgttactttacagcttgcccacgttttc
aagccaatattgaaagatctgaatgcagaagaactaatcaccaatatcgaaaacccactg
gtttatgtccttgcggatatggaaaaagaaggggttagaattgatatggaaactttgatc
agctattctaaagagctggaagttgatatccgcaggtttgagcaaagtgtttatgataaa
gcgggtgtagtattcaacctggcttctccaaaacaattgggagaagttctttttgataaa
ctgaagctggatcctaaagcaaaaaagacaaaaacaggtcaatatcaaaccggagaagat
gttttatccgcgctggcgcataaaagtgatattgtaaaagatattcttgatttccgtcag
ctgcaaaagttaaaatcgacttatgtggacgcacttcctttattggttaaccccaaaaca
ggccgtgtacataccagttataaccaagctgtggcggctacaggaagattaagttcaaat
aaccctaatcttcagaacattcctatccgtacagagcgtggcagggaagtccgtaaggca
tttattgcaagagatacagatcatgtactgctttcggcagattattcgcagatagagctt
cgtatcattgctgatatcagtaaagaagaaaacatgctggatgcttttagcaaaggaatt
gatattcacacggcaacagcggccaaggtttacggaattactattgaggaagttgattct
acgcagcgccggaacgcgaaagcagtaaatttcggtattatttacggacagtcggctttt
ggtttgtctcagaatctgggtataccgagaaaagaagctgcggagatgatcgagcagtac
tttgcacagtatcctggtatcaaaagatatatgacggataccatgaactttgcgcgtgaa
aatggctttgtggaaacgatgatgggtagaagaagatatttaagagatatcaattcggct
aatcagactgttcgtggttttgcagaacgaaatgcaattaatgcaccaatacagggatca
gccgctgatatgatcaagattgcaatgattcatattcatcaggatattaaagatcagaag
ctacagtctaaaatgaccatgcaagtgcatgatgagctggtgtttgatgtgttgaaatct
gaagttgatgcgatgaagaaaattatcacgcaccggatgaagactgccatcaaaacaact
gtacctatcgaaatcgaaatcggagaaggaaatacctggctggaagcacactaa

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