KEGG   Pedobacter cryoconitis: AY601_4323
Entry
AY601_4323        CDS       T04341                                 
Name
(GenBank) Ribonuclease III
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
pcm  Pedobacter cryoconitis
Brite
KEGG Orthology (KO) [BR:pcm00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    AY601_4323
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcm03019]
    AY601_4323
   03009 Ribosome biogenesis [BR:pcm03009]
    AY601_4323
   03036 Chromosome and associated proteins [BR:pcm03036]
    AY601_4323
Enzymes [BR:pcm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     AY601_4323
Messenger RNA biogenesis [BR:pcm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AY601_4323
Ribosome biogenesis [BR:pcm03009]
 Eukaryotic type
  90S particles
   RNase
    AY601_4323
 Prokaryotic type
  rRNA processing factors
   AY601_4323
Chromosome and associated proteins [BR:pcm03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     AY601_4323
SSDB
Motif
Pfam: Ribonucleas_3_3 Ribonuclease_3 dsrm RM44_endonuclase
Other DBs
NCBI-ProteinID: AMQ01170
UniProt: A0A127VIQ4
LinkDB
Position
complement(5038602..5039330)
AA seq 242 aa
MPLFDLYKLYLSPDKEFIKKLKNMLGFVPGNTVLYKMAFRHRSVAKVLKNGSRSSNERLE
FLGDAILGAVIAELLFKSYPYKEEGFLTEMRSKIVNRVNLNQLARKMGFDQLITFDQKMV
NMQTKHHSMLGDAFEALIGAVYLDKGYNFTKELLLKRIVKPYIDVHTLELTETNFKSKLI
EWCQRHAKDITFEMMENSEGDSAKLFTIQAMIDGESFGIGRDYNKKNAEKQAAEKACEAL
SL
NT seq 729 nt   +upstreamnt  +downstreamnt
atgcccctatttgacctatataaactctatttatcgcctgataaagagtttataaaaaag
ctgaaaaatatgttaggctttgtgcctggaaataccgttttgtataaaatggcattcagg
cacaggtctgtggctaaagtattgaaaaatggaagccggagcagtaacgaacgcctggaa
tttttgggtgatgccatcctgggtgctgttattgcagaattactctttaaaagttatccc
tataaagaagaaggtttccttacagaaatgcggtccaagatcgtaaacagagtaaattta
aatcagcttgcccgtaaaatgggttttgatcagctcattacattcgatcagaaaatggtg
aatatgcagactaaacaccactctatgctgggtgatgctttcgaagctttaataggcgct
gtttatctggataagggttacaatttcaccaaagagctactgcttaaacgtattgtcaag
ccatatattgacgttcatacgcttgaacttacagaaactaacttcaaaagtaaactgata
gaatggtgccagcgccatgctaaagatatcacgtttgaaatgatggaaaacagtgaaggc
gacagcgctaaactttttactatacaagcgatgattgatggggaaagtttcggtattgga
agagattataataagaaaaatgcggagaaacaagctgctgaaaaggcttgtgaagcgtta
tctctctaa

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