Cutibacterium acnes 6609: TIB1ST10_07550
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Entry
TIB1ST10_07550 CDS
T02065
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolizing, CPSF 100 kDa analog
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pcn
Cutibacterium acnes 6609
Pathway
pcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TIB1ST10_07550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcn03019
]
TIB1ST10_07550
Messenger RNA biogenesis [BR:
pcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TIB1ST10_07550
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AEH29796
LinkDB
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Position
complement(1584036..1585727)
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AA seq
563 aa
AA seq
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MAETGLMTPPDLQPDVLRIIPLGGLGDVGRNMSCYEINGEMLVIDCGVLFPEDDHPGVDL
LLPGLDYLDEEKLAKVKALVLTHGHEDHIGAVPYLLKRRPDIPIYGSKLTLALVEAKLRE
HRIKGYKLNVVHEGDVAEVGEQFDLEFIAVNHSIPDALAVCVRTDAGTLINTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFMVDSTNAEVPGFVKSETEIEPAIERVFEKAKKKLIVA
CFASHVHRVQQVLNMAVRHHRKVCYVGRSMVRNMAVAQDLGYLDVPENTVIELRDLDHYR
DNEVVIISTGSQGEPLSALARIANREHRDIEVGEGDTVLLASSLIPGNENAVYRVINGLT
KLGAAVVHKGNALVHVSGHAAAGELLYAYNIVRPRAVMPIHGEVRHLVANADLAKATGVD
ENNVVLVEDGGVIDLVDGVPRVVGKVDASYILVDGSGVGELTEDTLTDRRILGEEGFLSV
VTVVDTRSASVVSRPAIQARGFAEGDSVFAEITDQIVTELEKAMAGGMDDTHRLQQVVRR
TIGRWVSRSLRRRPMIVPVVVKI
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
gtggctgagactggactgatgacacccccggacctgcaaccggacgttttgcgcatcatc
cccctcggaggcttgggggatgttgggcgcaacatgtcgtgctatgaaatcaacggggag
atgctcgtcattgactgcggggtgctcttcccagaggacgaccatcccggggttgatcta
ctgcttcccgggctggactacctcgacgaggagaagctggccaaggtgaaggctctggtg
ctcacacatggccacgaggatcatattggtgcggtgccgtacctgcttaaacgtcgcccc
gatatcccgatctacggctctaagctgaccctggcgctggtcgaggcgaaactgcgtgaa
caccgcattaagggctacaaactcaatgttgttcacgagggcgatgtcgctgaggttggc
gagcagtttgacctggaatttatcgccgttaaccactccattcctgacgctctggcagtg
tgtgtgcgcaccgatgccggaactctcattaacaccggcgacttcaagatggaccagctt
ccgctagacggacgcatcaccgatctgcgtgccttcgcgcgactcggtgaggagggggtc
gatctgttcatggttgactccacgaatgctgaggttccggggttcgtgaagtccgagact
gagatcgagcctgctatcgagagggtcttcgagaaggcgaaaaagaagcttattgtggct
tgcttcgcctcccatgtgcatcgcgtccagcaagtgctcaatatggccgtgcgtcatcac
cgcaaggtttgctacgtcggtcgttcaatggtccgcaatatggctgttgctcaggacctg
ggctacctcgacgtgccggagaacaccgtcatcgagctgcgcgacctcgaccactaccga
gataacgaggtcgtcatcatctccactgggtcccaaggtgagccactttcggccctagca
aggatcgccaaccgagagcaccgagacatcgaggtgggggagggagataccgttttgctg
gcatcctctctcatcccgggtaatgagaatgccgtctatcgagtgattaatggcctgacg
aagcttggcgccgccgtggtacataagggcaacgctttggtccacgtttccggccatgcc
gcagccggagagctgctgtacgcgtataacatcgtgcggccacgcgctgtgatgccgatt
catggtgaggtgcgtcatcttgtcgctaatgccgatctggccaaagcaaccggtgtcgat
gagaacaacgtggtgcttgtcgaggacggcggggttattgaccttgttgacggagtaccg
cgagttgttggcaaggtcgatgcctcgtacatccttgttgacggatctggggtgggggag
cttaccgaggacacgctcactgatcgccgtatcctcggtgaggagggattcttgtcagtc
gtcaccgtggtcgacacccgctcggcgtcagtggtgtctcgcccggcgatccaggcgcgt
ggttttgccgagggcgactcggtcttcgcggagatcaccgaccagatcgtcactgagcta
gagaaggcgatggccggtggtatggacgatacccaccggttgcaacaggtggttcgtcgg
accattggtcggtgggtatcgcggtctctgcggcgtcgacctatgatcgtgcctgtcgtc
gtcaaaatctga
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