Phanerochaete carnosa: PHACADRAFT_134399
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Entry
PHACADRAFT_134399 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pco
Phanerochaete carnosa
Pathway
pco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PHACADRAFT_134399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pco03021
]
PHACADRAFT_134399
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_134399
Transcription machinery [BR:
pco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PHACADRAFT_134399
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PHACADRAFT_134399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCHC
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
18908299
NCBI-ProteinID:
XP_007390578
JGI:
Phaca1_134399
UniProt:
K5VDT2
LinkDB
All DBs
Position
Unknown
AA seq
296 aa
AA seq
DB search
MSSAISNPLGAPTGLKDLIQPQFHQNNFAEENYVKNELGVKLDKDDQICRLNLSSTGCPL
GPLHCPLRHTTPSTQNFQPPKQLPTHPRERERLSTVCKHWLRGLCKKGDQCEFLHEYNLR
RMPECWWYAKYGYCSAGDECLYAHPKERRVECPDYNRGFCKLGPSCPRKHVRRVVCQNYL
TGFCPLGPECPRGHPKPDLPLPKAYEPPEPPSQRDLGPPPPGYGRYADFDRGFGGAGPPG
AGGTLGPPGGRRNLEDVVCFKCGERGHYANHCNRRNVPGNRGGFDRATYKRYGEAE
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgagctccgccatatccaaccccctcggtgcgcctaccggtctaaaagaccttatacaa
ccgcagttccaccagaataacttcgcggaagagaattacgtgaagaatgagctcggggtc
aagttggacaaggatgatcaaatatgtcgtctgaatctgtcctcaacgggttgccctctt
ggcccgctgcactgtccactgaggcacacaacgccgtctacgcaaaattttcagccgccg
aagcagctgcccacgcaccctcgtgagcgggagcgtctctctacggtctgcaagcactgg
ctgcgtggactgtgtaagaaaggcgaccaatgcgagttcttgcatgagtacaacctgagg
cgaatgccggagtgctggtggtacgcgaagtacggctattgttccgcaggcgacgagtgt
ctgtacgctcacccgaaggagcggcgagtggagtgccccgactataatcggggattttgc
aaacttgggccatcatgcccgcgaaagcatgtccgtagggtcgtgtgtcaaaattatctg
acaggattctgtcctttggggccagaatgtcctcgtggccacccgaagccggatctaccc
ctcccgaaggcatacgagcccccagagccaccatcgcaacgcgatttgggacctcctccg
cctggttacggtagatatgcggacttcgaccgtggatttggcggtgcaggtccgccaggt
gcgggaggtactcttggtcctcccggcggtcggcggaacttggaggatgtcgtatgcttc
aagtgcggtgaacgcggtcattacgcgaaccactgcaatcgccgcaacgtccctggcaac
cgtggcggatttgacagggcgacttataagagatatggcgaggctgaatga
DBGET
integrated database retrieval system
