KEGG   Phanerochaete carnosa: PHACADRAFT_175251
Entry
PHACADRAFT_175251 CDS       T03128                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
pco  Phanerochaete carnosa
Pathway
pco03020  RNA polymerase
pco03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PHACADRAFT_175251
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHACADRAFT_175251
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pco03021]
    PHACADRAFT_175251
   03019 Messenger RNA biogenesis [BR:pco03019]
    PHACADRAFT_175251
   03400 DNA repair and recombination proteins [BR:pco03400]
    PHACADRAFT_175251
Transcription machinery [BR:pco03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     PHACADRAFT_175251
Messenger RNA biogenesis [BR:pco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHACADRAFT_175251
DNA repair and recombination proteins [BR:pco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PHACADRAFT_175251
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 18909718
NCBI-ProteinID: XP_007397418
JGI: Phaca1_175251
UniProt: K5UXB1
LinkDB
Position
Unknown
AA seq 170 aa
MFFIKELTHTILLHPSYFGPRMLQYLESKLYADVEGTCSGQFGYIIAVVTILNIGEGMVL
PGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMKFD
PNSNPPSFASDEQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGVIE
NT seq 513 nt   +upstreamnt  +downstreamnt
atgttcttcattaaagaactcacgcacacgatcctcctccatccatcctactttgggccg
cggatgctccagtacctcgagtcgaaactctatgccgatgtcgagggaacatgttctgga
caatttggatacatcattgcggtcgtaactattctgaatattggcgaaggcatggtgctg
ccaggaagtggacaggcggagttcattacgcggtaccgagccattgtgttcaaaccgttt
aagggtgaggtggtggatggtgttgtgaataacgtcaacaagatgggcttcttcgcggac
gtcggaccgctaactgtcttcgtgtctcaccaactcatacatcccgacatgaaattcgac
cccaattcaaatccaccttcgtttgcttcggacgagcagattatcgagaagaacacgaag
gtccgactgaaaattgtgggaacccgtgtggatgcgacggaaattttcgctattgggaca
ataaaagaagaccacctgggtgttattgaatga

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