Phanerochaete carnosa: PHACADRAFT_175251
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Entry
PHACADRAFT_175251 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
pco
Phanerochaete carnosa
Pathway
pco03020
RNA polymerase
pco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PHACADRAFT_175251
09124 Replication and repair
03420 Nucleotide excision repair
PHACADRAFT_175251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pco03021
]
PHACADRAFT_175251
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_175251
03400 DNA repair and recombination proteins [BR:
pco03400
]
PHACADRAFT_175251
Transcription machinery [BR:
pco03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
PHACADRAFT_175251
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHACADRAFT_175251
DNA repair and recombination proteins [BR:
pco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PHACADRAFT_175251
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
18909718
NCBI-ProteinID:
XP_007397418
JGI:
Phaca1_175251
UniProt:
K5UXB1
LinkDB
All DBs
Position
Unknown
AA seq
170 aa
AA seq
DB search
MFFIKELTHTILLHPSYFGPRMLQYLESKLYADVEGTCSGQFGYIIAVVTILNIGEGMVL
PGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMKFD
PNSNPPSFASDEQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGVIE
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgttcttcattaaagaactcacgcacacgatcctcctccatccatcctactttgggccg
cggatgctccagtacctcgagtcgaaactctatgccgatgtcgagggaacatgttctgga
caatttggatacatcattgcggtcgtaactattctgaatattggcgaaggcatggtgctg
ccaggaagtggacaggcggagttcattacgcggtaccgagccattgtgttcaaaccgttt
aagggtgaggtggtggatggtgttgtgaataacgtcaacaagatgggcttcttcgcggac
gtcggaccgctaactgtcttcgtgtctcaccaactcatacatcccgacatgaaattcgac
cccaattcaaatccaccttcgtttgcttcggacgagcagattatcgagaagaacacgaag
gtccgactgaaaattgtgggaacccgtgtggatgcgacggaaattttcgctattgggaca
ataaaagaagaccacctgggtgttattgaatga
DBGET
integrated database retrieval system