Phanerochaete carnosa: PHACADRAFT_177891
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Entry
PHACADRAFT_177891 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_177891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_177891
03009 Ribosome biogenesis [BR:
pco03009
]
PHACADRAFT_177891
Enzymes [BR:
pco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHACADRAFT_177891
Spliceosome [BR:
pco03041
]
Complex A
U2 snRNP components
U2 related factors
PHACADRAFT_177891
Complex B
PHACADRAFT_177891
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PHACADRAFT_177891
Ribosome biogenesis [BR:
pco03009
]
Eukaryotic type
90S particles
Helicases
PHACADRAFT_177891
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
SRP54
AAA_19
nSTAND3
CCCAP
Flavi_DEAD
PhoH
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
18909820
NCBI-ProteinID:
XP_007400375
JGI:
Phaca1_177891
UniProt:
K5VX91
LinkDB
All DBs
Position
Unknown
AA seq
743 aa
AA seq
DB search
MSEVFNPYTKAPPLSKPTAEPLFGFLARNVVSVQVTKAMEGDVNPFTKQPHSAQYKRILE
VRKKLPVFAQMREFYEMFNKHQIIVMVGETGSGKTTQIPQFVCYSDLPHVKGKMVACTQP
RRVAAMSVAKRVADEMDVPLGKQVGYSIRFEDMTERGTTFLKYMTDGMLLREAMNDPDLL
RYSTIILDEAHERTLATDILMGLLKALAKRRSDLKIIVMSATLDALKFQKYFSLIPGEPA
PLFKVPGRTHPVEVFYTQEPEPDYVEAAIRTVLMIHRAEDPGDILLFLTGEEEIEDACRK
IKLEADDLLNQDPDAVGPLVCIPLYSSLPPQQQQRIFDPPPSSRTPDSPPGRKVVVSTNI
AETSLTIDGIVYVVDPGFSKQKVYNPRVRVESLLVSPISKASAQQRAGRAGRTRPGKCFR
LYTEKDFMTELEEQTHPEILRSNLSNVVLELVKLGIKDLVRFDYVDAPAPETLMRALELL
NYLAALDDDGNLTPLGGIMAEFPLDPQMSKMLIVSPEFNCSNEILTIVAMLSVPNVWIRP
PNQRKEADAAKQLFTVPDGDHLTFLNVYNNYQENKHDKNWAWTNYLSSRALMQAENVRAQ
LERTMERFEVSLVSTQDERKLYLNVRKALVCGYFMQVAHREGEKNQYMTVKDNQVVGLHP
SCGLDNSPEWVIFNEFVLTTRPYVRTVTTVLPEWLLEYAPSYFRLDDFKDSEMKRALVRV
VNKRAGKRDYPTEDNRKVKKLRK
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagttttcaatccctacactaaggccccgcctctctccaagccgacggcggag
ccattatttgggttcctggcccgcaatgttgtctcagtgcaggtcacaaaagcaatggag
ggagatgtcaacccgttcacgaagcaacctcacagcgcgcaatacaagaggatccttgaa
gttcgcaagaagctgcctgtgttcgcgcaaatgcgggagttctacgaaatgttcaacaag
caccagattatagtcatggttggtgagactggttcaggcaagacaacacaaataccacag
tttgtgtgctactccgatcttccgcacgtgaagggcaagatggtcgcgtgtacccagcca
cgtcgagttgccgccatgtcggtagccaagcgtgtcgctgacgagatggacgtgccgctt
ggcaagcaggttggctactcgatccgtttcgaagacatgacagaacgaggaacgacgttc
ttgaagtacatgaccgatggtatgcttctccgtgaagcgatgaacgacccagatctgcta
cgatactccacgatcatccttgacgaagcgcacgaacgtacgctcgctacagatattctc
atgggtctactcaaagccttggctaagcgccgctccgacctcaaaatcatcgtcatgtcc
gcgacacttgacgccctcaagttccaaaaatacttctctctcataccaggcgagccagcg
ccgctgttcaaagttcccggacggacccatcccgttgaggtgttctacacccaggagcct
gaacccgactacgttgaggctgctatccgcacggtgctgatgattcaccgcgccgaagat
cctggtgatatcctcctcttcttgactggtgaagaagagatcgaagacgcatgtcggaag
atcaaattagaggctgatgaccttctcaaccaagacccagacgccgttgggccactcgtg
tgcattcccctctactcgtcactgcccccacaacaacagcagcgcatcttcgacccgcca
ccatcgtctcgcactcctgacagcccgcctggccgcaaggtcgtcgtgtcgacaaatatc
gccgagacgtcgctcaccatcgacggtatcgtctacgtcgtcgaccctggcttctcaaag
cagaaggtgtacaacccccgcgtccgtgtcgagtcccttctcgtctctccgatctccaaa
gcctctgcgcaacagcgtgcgggccgtgcgggtcgcactaggcccggcaagtgtttccgt
ctgtacacggagaaagatttcatgacggagctcgaggagcaaacacatcccgagatcctc
aggagcaacttgtcgaatgtcgtgctggagctcgtcaagctgggcatcaaggacctggtg
cgcttcgattatgtcgatgcacccgcgccggagactttgatgcgtgcgctggagctgctc
aactacctcgctgcgctggacgacgacggcaacctcacccctcttgggggcatcatggcc
gaatttccccttgatcctcagatgtccaagatgcttatcgtcagcccagagtttaactgc
agcaatgagattctaactatcgtcgccatgctttctgttcccaacgtctggatacgtccg
ccaaaccagcgtaaggaggccgatgcggcgaaacagctgttcacggtgccagatggcgac
catctcacgtttttgaacgtctacaataactaccaagagaacaaacacgacaaaaactgg
gcctggaccaactacctctcgagccgtgcgctgatgcaggccgagaacgtgcgggcacag
ctcgaacgcacgatggagcgcttcgaggtctccctcgtgtcgacacaggacgagcgcaag
ctgtacctcaacgtgcgcaaggcgctcgtctgcggctacttcatgcaggtcgcgcaccgg
gagggcgagaagaaccagtacatgacggtgaaggacaaccaggtcgtcggcctgcacccg
tcgtgcgggcttgacaactcgcccgagtgggtcatctttaacgagttcgtgctcacgacg
cggccgtacgtccgcacggtgacgacggtcctgcccgagtggctgctggagtacgcgccg
tcgtacttcaggctggacgacttcaaggacagcgagatgaagcgcgcgctcgttcgtgtc
gtgaacaagcgtgccggcaagcgtgactaccccaccgaggacaatcgcaaggtcaagaag
ctgcgcaagtag
DBGET
integrated database retrieval system
