Phanerochaete carnosa: PHACADRAFT_184407
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Entry
PHACADRAFT_184407 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_184407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_184407
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_184407
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PHACADRAFT_184407
Spliceosome [BR:
pco03041
]
Complex B
Other components
Prp19-related factors
PHACADRAFT_184407
Complex C
PHACADRAFT_184407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
Mad3_BUB1_I
TPR_2
TPR_15
NRDE-2
ARM_TT21_C
DUF6082
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
18910203
NCBI-ProteinID:
XP_007395946
JGI:
Phaca1_184407
UniProt:
K5UZM0
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MPSAIQISPTLESLQALFPLAFPIPKPTTHPDLVSTKDLHREEDLLRNPNSFRTWWSAIQ
NTKEAANSLLKIEGSLDLSPDVAALLGPLASPNARKSLQRLTYLYEAALTQFPGSFKLWK
SYLQTRMSYVLGRLIVRKKAGGKKKFPEMREALEDEKEDLERWEGGLDGVIGWEEWKALV
ATFERALMWLPKMPRLWLLYLSIFDHPFCPPQISHIHARRTYDRAFRTLPPSLHSRIWVR
YLLWAESKGGATTVAVYRRYLAVDPSITEHYTALLLSPENPAPRPLEAAKLLLSLARKAA
KGDYTSPEGKSPYQLLCEWLEVVEQYAEEVGMDVDDTINSNAAIADAKKEQESSAALPPE
PAKLEGRLIRFAGPAVAVDGDGKVLPPYDEDEDPISPRKLNIENIIKSDGLEVYKDQAGR
LWTGLATYWIKRGEFDRAKKTFEDGMASVLAIRDFTQIFDAYAEFSESLISALMESIANP
DEDEDEEDVAATEAELDAKMREFEELMDRRPFLVNDVLLRRNSNDVQEWEKRVALWGEND
EKVAETYTQALSTVNPKRATANFHRLYINFAKFYEEGGTIGQAEPDLDSARKVLEKATKI
NFKSVDELAEVWCEWAELEIRHENFDEAIRVMQRASAVPTNTKINYHDHALPVQARLFKS
LKLWSFYVDLEESLGTVESAKAIYDKILELRIANAQVIVNYAAFLEENKYFEESFKVYER
GIELFTYPVSFEIWNIYLVKFVKRYGGEKVERTRDLFEQALEKCPPKNCKPVFLMYAQFE
EEHGLAKRAMAIYDRATQVVNDEDKFEIRKLFTIYIAKAAENYGLTATRPIYESALEILP
DRQTAEMCLRFAQMERKLGEIDRARAIYAHASQFCDPRIHQNFWAEWNAFEIETGSEDTF
REMLRIKRSVQAQFNTEVSYIAAQMAAKQTNGGGAEEVLPADAMAAAERQAADGTKGPAF
VAATQSTNVRMQEAEPAKAGNEDEIHISDDEDP
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagcgatacaaatcagtccgacactcgagtcgctacaggcactctttcctctt
gcgttccctatacccaaaccgacaacccacccagaccttgtctcaacaaaagacttgcac
cgggaggaagacctcctccgcaatccgaactctttcaggacttggtggtccgccatccag
aatacgaaggaggctgctaactctctgctgaaaattgaagggtccctagacttgtctccg
gatgttgccgcactccttggcccgctggcatccccgaacgcgcgaaaatcgctccaacgc
ttgacctacctctatgaagctgccctcactcagttccctggctcgttcaagttatggaaa
tcttatctgcaaacacgtatgtcttatgttcttgggcgattgatcgtcaggaagaaggct
ggaggcaagaagaagttcccggagatgcgggaggccttggaggatgagaaggaggacctt
gaacggtgggaaggtggtctcgatggcgtaatcggctgggaagaatggaaggctcttgtc
gctacgtttgaaagggctctcatgtggctaccaaagatgccgcgtttgtggctgttgtac
ctgtctatcttcgaccacccattttgtcctccacaaatctcacacattcatgctcgtcgc
acctatgaccgtgctttcaggacactaccaccctctctgcactcgcgcatctgggtccgc
tatctgctctgggcagagagcaagggcggtgctactactgttgcggtgtaccgcaggtac
cttgcagtcgaccccagtataaccgagcattatacagccctcctgctctcgcccgagaat
ccagcacctcgtccgctggaggctgctaaactgttgttatcattggcgaggaaagctgct
aagggcgattacaccagcccggagggcaagagcccgtaccagctgctgtgcgaatggctt
gaggttgtagagcagtatgccgaagaagtcggaatggacgttgacgataccatcaattcc
aacgcagccattgccgatgccaagaaggagcaggagtcatccgctgcgctgcctccggag
cccgccaagctagagggacgccttattcgattcgcgggtcctgcggttgctgtcgacggc
gacggtaaggtactaccgccttacgatgaggacgaggatcccattagcccacgaaaactt
aacatcgagaatataatcaagtcagacggcttggaagtctacaaggaccaggcaggccgt
ttgtggaccggcttagcaacatattggatcaagcgtggcgaatttgaccgcgcgaagaag
accttcgaggatggcatggcttccgtgctcgccattcgggatttcacccagatctttgac
gcatacgccgaattctccgagagcctgattagcgcgttaatggagagcatagcaaacccg
gatgaagatgaagacgaggaggatgtcgcggccactgaggcagaactcgacgcgaaaatg
agggagttcgaggagctcatggaccgcagacccttcctcgtcaacgacgtactcctcaga
cgtaattcgaacgacgtacaggagtgggagaagcgtgttgcattatggggcgagaacgac
gagaaggtggctgagacctacacccaggctctctcgaccgttaatcccaagcgtgcgact
gctaatttccaccgcttgtatatcaacttcgcgaagttctacgaggagggcggtaccatc
ggccaggctgagcctgacttggacagtgcacgaaaggtccttgagaaagccaccaagatc
aacttcaagtccgtcgatgaacttgctgaggtctggtgcgagtgggctgagctggaaatc
cgccatgaaaactttgacgaggcgatcagggtaatgcagagggcatctgctgtgccaaca
aacacaaagatcaactaccatgatcatgcactccccgtgcaagcacgtctgttcaaatcg
ctcaagctctggtcattctacgtcgatctggaagagtcactagggaccgttgaatctgcg
aaggccatatatgacaaaatcctcgagctgcggatagcgaatgcgcaagtcatcgtcaac
tacgcagctttcctagaggaaaacaagtactttgaggagagtttcaaggtctacgagcgt
ggtatagaactcttcacataccctgtctcgttcgagatctggaacatctatctcgtcaag
ttcgtgaagcgatatggcggcgaaaaagtcgagcgcacgcgagacctcttcgagcaagca
ttggagaagtgtccaccgaagaattgcaaaccagtgtttctcatgtatgcgcaattcgaa
gaggagcatgggctcgccaagcgcgctatggccatttacgaccgggcaacgcaagtggtc
aacgatgaggacaaattcgagattcgcaagctattcactatctatatcgcgaaagcagcc
gaaaattacggtctcactgctacacgacccatctacgaaagcgccctcgagattcttccc
gaccgacagacggccgagatgtgcctgcgcttcgcacagatggaacgcaagctcggtgag
atcgaccgcgcccgcgccatctatgcgcacgcatctcaattttgcgacccacgaattcac
caaaacttctgggccgagtggaacgcgttcgagatcgagaccggctcggaggacactttc
cgcgagatgctccgcatcaaacgcagcgtccaggcccagttcaataccgaggtgtcgtac
attgctgcccagatggctgcgaagcagacgaatggaggtggcgccgaagaagtgctacct
gcagatgcgatggcggcagccgagcgccaagccgctgatgggacaaagggtcctgcgttc
gtcgctgcaacgcagagcacgaacgtgcggatgcaagaagctgaaccagccaaggctgga
aacgaggatgagattcacatttctgacgatgaggatccatag
DBGET
integrated database retrieval system
