KEGG   Phanerochaete carnosa: PHACADRAFT_203950
Entry
PHACADRAFT_203950 CDS       T03128                                 
Name
(RefSeq) hypothetical protein
  KO
K12816  pre-mRNA-processing factor 17
Organism
pco  Phanerochaete carnosa
Pathway
pco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHACADRAFT_203950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pco03041]
    PHACADRAFT_203950
Spliceosome [BR:pco03041]
 Complex C
  Other components
   Step II factors
    PHACADRAFT_203950
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_RIG_2nd WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_NOL10_N Beta-prop_Vps41 WDR54 Beta-prop_NWD2_C Beta-prop_VPS8
Other DBs
NCBI-GeneID: 18912244
NCBI-ProteinID: XP_007390246
JGI: Phaca1_203950
UniProt: K5WN05
LinkDB
Position
Unknown
AA seq 581 aa
MSLVAGYSSDEDNGPASPTADAFGLSSLPATKKPRIEEPLSSKPIVDAAPHVLAEDPLHQ
TSLVLRPTDTQMNVNINYADMILPLQGPENPFGDRGRFLNQNALAGHVEEQSMTDHAFRQ
QHLTHTILGYSANPSVDPNAPAVLGSVEKAMANGFQTIGSIKAPMAAKKELKRKRMPQGD
LEVVDGNGAYEGPWARWGGEEQDTAMPEGVENAEEEEESEPEEEVQIKKAKPKRGAPGLE
SSVFHGKSLVDYQGRTYMSPPVSEAPQLQHEPGSQECFIPKTCIHTWTGHTQGVSVLRLF
PNTGHLLLSGSMDTKIKLWDVYTHGNCLRTFHGHMKAVKDVTFSNDGRRFLSCGYDRQIK
LWDTETGQCLKRFSNGKIPYVVRFHPDEDKQHIFLAGMSDKKIIQYDMNSGEITQEYDQH
LGPVNTITFVDENRRFVTTSDDKTIRAWDFDIPVVIKYIAEPYMHSMPAVTLHPSKKYFA
AQSLDNQILVYSTDNFRQARNKRFAGHSVAGYACQVGFSPDGKWISSGDGEGNIVFWEWK
TGRIKSRLRAHSKVVIAHEWLPHETSKVVMGSWDGLIKLWD
NT seq 1746 nt   +upstreamnt  +downstreamnt
atgtctctcgttgctggatattcgtctgatgaggataatggcccagcttctcccacagca
gatgctttcggcctctctagtctgcccgcgacgaagaagcctcgcatcgaggagcctttg
tccagcaaaccaatcgtagacgctgcccctcatgtcctggcggaggatcctttgcaccaa
acgtctttggtgctacgaccaacggatacacaaatgaatgtgaacatcaactatgcggac
atgatattgcctctgcaagggcctgagaaccccttcggcgaccgcggacgcttcctcaac
caaaatgccctcgctgggcatgtagaagagcagtccatgactgatcatgccttccgccag
caacacctaacacacaccatccttggctattccgctaatccttccgtcgaccctaacgcg
ccggccgtccttggttcagtggaaaaggccatggcgaatggcttccagacaattggatcc
atcaaggcaccgatggccgcgaagaaggagctcaagcgcaagcgcatgcctcagggcgac
ttggaggtagttgatgggaacggcgcatacgagggtccctgggcgcgctggggcggcgag
gagcaggacacggctatgccggagggagtcgagaacgccgaggaggaggaagagtcagag
cccgaggaggaggttcagatcaaaaaggcgaagccaaagcgcggtgcgccaggcctcgag
tcgtctgtgttccacgggaagtcgttggtcgactaccagggcaggacgtacatgtcgcca
ccggtgtcggaggcaccccaacttcaacacgagcccggctcgcaagaatgtttcatcccg
aaaacatgcatccacacctggactggacacacgcagggcgtgtctgtgctccgtctgttc
cccaacaccggccatttgctgctcagtgggtcgatggatactaagatcaagttgtgggat
gtctacacgcacgggaattgtctccggacattccacggtcatatgaaggccgtcaaggat
gtgaccttctccaatgatggtcgaagattcctgtcatgtgggtatgaccggcagatcaag
ctgtgggacacggaaactggacagtgtttgaaaagatttagtaacggcaagatcccctac
gtcgtccgcttccatccggatgaggacaagcagcacattttccttgctggaatgtcggac
aagaagatcatccagtacgacatgaactcgggcgagattactcaagaatacgaccaacat
ctgggacctgtgaacacaatcaccttcgttgatgagaaccgtcgattcgttacgacttcg
gatgacaagaccatacgtgcatgggactttgacatcccagtcgtgataaagtacattgca
gaaccatacatgcattcaatgccggccgtcaccctgcatccaagcaagaaatacttcgcc
gcacagtctctcgacaaccagattctcgtgtacagcacggataatttccggcaagcgcgt
aacaagcgatttgcaggacactcggtcgcaggctacgcctgtcaggtgggcttctcacct
gatggtaagtggataagcagcggcgatggcgaggggaacatcgtgttctgggagtggaag
acgggccgtatcaagagccgtctgcgtgcacactctaaggtagtcatcgcgcacgaatgg
ttgccgcatgaaacgtcaaaagtagtgatgggctcctgggacggtttaattaagttatgg
gactga

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