Phanerochaete carnosa: PHACADRAFT_214164
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Entry
PHACADRAFT_214164 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pco
Phanerochaete carnosa
Pathway
pco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHACADRAFT_214164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_214164
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
PHACADRAFT_214164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HRDC
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
18913471
NCBI-ProteinID:
XP_007401689
JGI:
Phaca1_214164
UniProt:
K5VSR9
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MLNYARSDTHFLLFIYDHLRNALLDRAQSRAQSPSTASEPAPSTSSAVNPSHALVREVLS
RSEETALRVLEREVYDAEGGSGPAGWDTLARKWNKGALMAGERETVRRRIYKAVHAWRDR
AAREEDESTRYVLPNHYLFVLAEQPPADIAGLLSLFQHVPPVVRRRAKELFEAIRQAAAV
SSEESVVPTPTAPQAPQEPIQVDDASSTQTGETLPTDKASMLWSSGTAQRMTVSSSLFGN
TIKSVTKATGPAHLTASRSSLFTINGSSSAAELHRKRLQDVVSRIHGSLAIAPSVPKIVA
PAAAAVAEQAEEVPGQVEMPFVPASERQETARTVTAETAKDSIVVVGQSQRKKRKRVAAV
NVEREGEVEETFDYSTVSNILDEGSDHEPEAVGGGRKRRQKTQGRFDYGGFRAPPKAHSE
VKSGNQSRTFK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgctcaactacgctcggtcggacacgcacttcctgctgttcatctacgaccatctgcgg
aacgcactgctcgatcgcgcacaatcgcgggcgcaaagcccgtccaccgcttcagagccc
gcgccgagcacgtcgagcgccgtcaacccgtctcatgcgctggtgcgcgaggtgttgtcg
cgctcggaggagacggcgctgcgcgtgctcgagcgcgaggtgtacgacgccgagggcggc
tcgggcccggcaggctgggacacgctggcgcgcaagtggaacaagggcgcgctcatggca
ggcgagcgcgagaccgtgcggaggcggatctacaaggcggtgcacgcgtggcgggaccgt
gctgcgcgagaggaggacgagagcacgcggtatgtcttgccgaatcattacctgttcgtg
ctcgcagagcagccgcctgcggacattgcagggctgctgtcgttgtttcagcacgtcccg
cctgtcgtgcggcgacgtgcaaaggagctgtttgaggcaatacgacaagccgccgccgta
agcagcgaagaaagtgtagtgcctacgcccaccgctccacaggctccccaggaaccgata
caggtcgatgacgcgagctcaacacaaaccggcgagacacttcccaccgataaggcatcc
atgctatggtcttcagggactgcgcagagaatgacggtgtcatcttccttgtttggaaac
acgattaagagtgtcaccaaggccacgggaccggcgcacttgacagcttctcgaagcagc
ctgttcacaatcaatggatcgtcgagcgcagcggagctgcacagaaagcggctccaggac
gtcgtatcgcgcatacatggctcgctcgctatcgctccatccgttccaaagatcgtggca
cccgcagcagccgccgtagccgagcaagcggaggaagtgcccgggcaggtggagatgcct
tttgtgccggcgagcgagcgccaggagacagcgcggacggtcaccgcggagacggcgaag
gattctattgtcgtcgtgggccagtcgcagcgcaagaagcggaaacgggtcgcggctgtc
aatgtcgagagggaaggcgaggtggaggagacgttcgactactcgacggtctcgaacatc
ctcgacgagggatctgaccacgagcccgaagctgtaggcggcggtcgcaagcgcaggcag
aagacgcagggccgcttcgactatggcggcttccgcgcgccacccaaggcgcacagcgaa
gtcaagtctggaaaccagtcgcgtacgttcaagtag
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