Phanerochaete carnosa: PHACADRAFT_246819
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Entry
PHACADRAFT_246819 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03013
Nucleocytoplasmic transport
pco03015
mRNA surveillance pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_246819
09122 Translation
03013 Nucleocytoplasmic transport
PHACADRAFT_246819
03015 mRNA surveillance pathway
PHACADRAFT_246819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_246819
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_246819
Enzymes [BR:
pco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHACADRAFT_246819
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PHACADRAFT_246819
Spliceosome [BR:
pco03041
]
Complex C
Other components
EJC/TREX
PHACADRAFT_246819
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PHACADRAFT_246819
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
18913916
NCBI-ProteinID:
XP_007390175
JGI:
Phaca1_246819
UniProt:
K5W9U6
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MSAHDNEELIDYEDEHDVVANGAPAHAANAVTVSQPAADGVAEDKKNFSGIHSTGFRDFL
LKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVN
GEVSVLVMCHTRELAFQIKNEYTRFAKYMPDVRISTFFGGIGIDKDKALLVDKSKCPHIV
VGTPGRLNALVRDKSLDASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSA
TLAKEIRVTCKKFMQNPLEIFVDDETKLTLHGLQQHYVKLEEIGKNRKLNELLDTLEFNQ
VVIFVKSVARAIELDKLLVSCNFPSISIHSGLGQEERIARYTAFKAFEKRILVATDIFGR
GIDVERVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSESDQQVMAQIQSRFEV
AVPELPDHIDPASYMTS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcacacgacaacgaggagctgatcgactacgaggacgagcacgacgttgtcgcc
aacggcgcccccgcccatgcggcaaatgctgtcactgtttcgcagccagccgctgacggg
gtggcagaggataagaaaaacttttcgggcattcattcgacgggtttcagggatttcctc
ctgaagcctgaacttctgcgcgccatctctgacctcggtttcgaacacccatccgaagtg
caacaagagtgcattccccaggccgtccttggaatggacgtactctgccaggcaaagtct
ggacacggtaaaaccgcggttttcgttcttgccacgctccagcagctcgagcctgtgaac
ggcgaggtctctgtcctcgtcatgtgccacactcgtgagctggcgtttcagatcaagaac
gagtacacccggtttgccaagtacatgcctgatgtacggatcagcaccttcttcggtgga
atcggcatagacaaggacaaggctctcctcgtagacaagtcgaaatgccctcacattgtc
gtcggcacacctggtcgcctcaacgcgcttgtcagggacaagtctctggacgcctccaaa
gtcaaacacttcgttctggacgagtgcgacaaaatgctcgaacagcttgacatgcgccgc
gacgtgcaagagatcttccgggcgactccccaccacaagcaagtcatgatgttcagcgcg
acgttggcgaaggagattcgagttacttgcaaaaagttcatgcagaaccctcttgaaatt
tttgtcgacgatgagactaagctcacgctgcacggtctgcagcagcactacgtcaagctg
gaagaaattggcaaaaacaggaagctcaatgagctgctcgataccctcgagttcaatcag
gttgtcatctttgtcaagtccgtggcacgtgccattgaactggacaaactcctggtctcg
tgcaacttccccagtatttctatccactcgggcctaggccaggaggaacgtatcgcgcgt
tacactgccttcaaggcctttgagaagcgtatccttgttgctactgacatctttggtcgt
ggtatcgatgtcgagcgtgtgaatattgtcgttaactacgactgtccgcccgacgctgac
agctacctgcatcgtgtcggtcgtgctggccggttcggtaccaaaggtctcgccattacg
tttgtgtcgtccgagagcgaccagcaggtgatggctcagattcagtcccgcttcgaggtt
gcggtgcctgaattaccggaccacattgaccccgcttcttacatgacatcttaa
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