Phanerochaete carnosa: PHACADRAFT_247167
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Entry
PHACADRAFT_247167 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_247167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_247167
03009 Ribosome biogenesis [BR:
pco03009
]
PHACADRAFT_247167
Enzymes [BR:
pco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHACADRAFT_247167
Spliceosome [BR:
pco03041
]
Complex A
U2 snRNP components
U2 related factors
PHACADRAFT_247167
Complex B
PHACADRAFT_247167
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PHACADRAFT_247167
Ribosome biogenesis [BR:
pco03009
]
Eukaryotic type
90S particles
Helicases
PHACADRAFT_247167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Motif
Other DBs
NCBI-GeneID:
18914012
NCBI-ProteinID:
XP_007390377
JGI:
Phaca1_247167
UniProt:
K5VD87
LinkDB
All DBs
Position
Unknown
AA seq
401 aa
AA seq
DB search
MADHPDPEIMRLSLSDLALRIKIMKVKMGSSIEDVLSQALDPPSPVNIQRAVSALVEVGA
LTTLQDITPMGRLLSKLPTDVHLGKFLLIACAFGCLDPALTIAAALNSKSPFLTPFGKEE
EAHRQKLSFRIENSDFFTLHNAFSSWRRACANGPSVARKLCRDTFMSHQNLQQIEELREQ
FLGYLIDSSFIKAPPALVKELNRARYSSRGRTRFVSPPTELDRNSGNYAIVGAALAAGLY
PKMLLAGGKPGTESLTTITNNQRVAFHPSSVNFGRKPSDFGVNYLCYFTIMQSKKMYAWE
TGPVEDLSVLLLCGDAEFKLLADTVSLDRKMRYSVSPKASVALKYLRKEMTSTLAIHFSG
KPVTEPDAVWEDTAMAMLGKVKPEDSEKKAEKITLVTNRVL
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccaccccgatcccgagattatgcgattgagcttgagtgaccttgctctgcgc
atcaagatcatgaaggtcaagatgggatcctccatagaagacgttctctctcaagccctc
gatccgccgtctccggtcaatattcagagggctgtatctgcattggtcgaggtcggggct
ctgacgacattgcaagatattacaccgatgggtcgactgctgagcaagttgccaaccgat
gttcaccttgggaaattcttgcttatcgcctgtgcctttggctgcctcgaccctgcgctc
acgatcgcggcagctttgaactctaagtctccctttttgacgcccttcggtaaggaagaa
gaggctcatcgtcagaaactatcgttcagaatagagaactctgattttttcacgcttcat
aatgccttttcaagttggcgtcgggcatgcgcgaacgggccttccgttgcgcgtaaactg
tgcagagacactttcatgagccatcagaatctgcaacagatcgaagagcttcgtgaacag
ttccttggctacctcattgattcctccttcattaaagcacctccagccttagtaaaggaa
cttaatcgagctcgttattccagccgaggacgaacacgctttgtctctccacctacggaa
ttggatcgtaactcaggcaattatgccattgtcggtgctgcactagctgcaggtctctac
cccaagatgctattggcggggggcaaaccaggcacggagagtttaacgactatcacaaac
aaccaacgcgtcgctttccacccgtcttccgtaaactttggacggaagccttcagatttt
ggggtgaattacttgtgctacttcacgatcatgcaatcgaagaagatgtacgcttgggag
acggggcctgtcgaagacctgtcggttctactgctatgcggagacgcagagttcaagctt
ttggcggatactgtctccttggacaggaagatgcgctacagcgttagtccgaaagcgagc
gttgctctcaagtaccttcggaaagagatgacgtccacgctggcgatacacttcagcggg
aaacccgtaaccgagcctgatgccgtttgggaggacacggccatggccatgctgggcaag
gtcaaaccagaggactcggagaagaaagctgagaaaatcactcttgtaacaaatagagtg
ctgtaa
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