Phanerochaete carnosa: PHACADRAFT_251816
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Entry
PHACADRAFT_251816 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_251816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_251816
03009 Ribosome biogenesis [BR:
pco03009
]
PHACADRAFT_251816
Enzymes [BR:
pco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHACADRAFT_251816
Spliceosome [BR:
pco03041
]
Complex A
U1 snRNP components
U1 related factors
PHACADRAFT_251816
Complex B
PHACADRAFT_251816
Ribosome biogenesis [BR:
pco03009
]
Eukaryotic type
Pre-60S particles
Helicases
PHACADRAFT_251816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Utp25_C
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
18915325
NCBI-ProteinID:
XP_007393238
JGI:
Phaca1_251816
UniProt:
K5X4Y9
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MSYGGGYSGGYGGGFHGGGGWGDDKMGGVGSGLRAIDWNQYKLERFEKNFYVEDKRVSAR
SDREIEDFRRIKEMKVQGRDVPRPVSSFDEVGFPEYLMSTIRAQGFAAPTPIQCQAWPMA
LSGHDVVAISQTGSGKTIAFALPAMLHINAQPLLAPGDGPIALILAPTRELAVQIQQECT
KFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLESGKTNLRRITYLVMD
EADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATWPKDVQKLANDFLKDFIQVNIGSTELT
ANHNIQQIIEVCSDFEKRSKLIKHLDQISQENAKVLIFVGTKRVADDITKYLRQDGWPAL
AIHGDKEQRERDWVLSEFKAGRSPILIATDVASRGLDVKDVGYVVNYDFPNNCEDYIHRI
GRTGRAGMKGTSYTYFTTDNAKSARELIGILREAKANVPTQLEEMAMYSGGGGRSRYGGG
GRGRGGGGGRYGGQQDNGYGNRNDRW
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagctacggcggcggctacagcggtggatatggcggcggtttccatggtggaggtggc
tggggggacgacaagatgggcggtgttggcagcggcctacgagctattgactggaaccag
tacaagctggaacgattcgagaaaaacttctacgttgaggataagcgcgtttcagcacgc
agcgaccgtgagatcgaagatttcaggagaatcaaggaaatgaaggtgcaaggtcgagac
gtgccgcggccagtgtcttcctttgacgaggttggattcccggagtatcttatgtctact
atccgtgcccaaggctttgctgctccgactccaatccagtgccaggcttggccgatggct
cttagtggccacgacgttgtcgctatctcccaaaccggaagtggaaagacgattgccttc
gctctccccgctatgttgcacatcaacgctcaaccgcttctcgcgcctggagacggtcca
atcgctctgatccttgcgccgactcgtgagcttgcagttcaaattcagcaggaatgcacc
aagtttggctcgaactctcgtattcgtaatactgccatctacggcggtgctcccaagggt
cctcagattcgtgacctgcagcgtggtgttgagattgtcatcgcaaccccaggtcgtctc
attgatatgctcgagtcgggcaagacgaacctccgtcgcatcacctacctcgtcatggat
gaagctgatcgcatgcttgacatgggtttcgagccccagatccgtaaaattgtcagccaa
attcggcctgaccgtcagactctgatgttcagtgctacctggcccaaggatgtacaaaag
ctggccaatgatttcttgaaagatttcatccaggtcaacatcggttccacagaacttact
gccaaccataatatccagcagattatcgaagtctgcagcgactttgaaaagaggtccaag
ctcatcaagcacctcgaccagatcagccaagagaatgcaaaggtcttgatctttgttggt
acaaagcgagtcgcggacgacatcaccaaatacctccgtcaagatggctggccggcgctc
gccattcacggcgacaaggaacagcgcgagcgtgattgggtcttgagtgaattcaaggct
gggcgttctccaatcttgattgctactgatgtggcttcgcgtggtctcgacgttaaggat
gttggttatgtcgtcaattatgatttccccaacaactgtgaagactatatccatcgcatt
ggtcgtacgggacgtgctggcatgaagggcacttcgtatacatacttcactactgacaat
gcgaagtccgctcgggaactcattggcattctgcgtgaggctaaggcgaacgttcctaca
caactagaggaaatggccatgtacagcggaggtggtggcaggagccgttacggtgggggc
ggtcgtggtcgtggtggaggtggtggacgttatggtggacagcaggataatggctacggc
aacaggaacgaccgctggtga
DBGET
integrated database retrieval system
