Phanerochaete carnosa: PHACADRAFT_251944
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Entry
PHACADRAFT_251944 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pco
Phanerochaete carnosa
Pathway
pco03018
RNA degradation
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_251944
09123 Folding, sorting and degradation
03018 RNA degradation
PHACADRAFT_251944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_251944
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_251944
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHACADRAFT_251944
mRNA degradation factors
5'-3' decay
Lsm complex
PHACADRAFT_251944
Spliceosome [BR:
pco03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PHACADRAFT_251944
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
18915366
NCBI-ProteinID:
XP_007393327
JGI:
Phaca1_251944
UniProt:
K5V5P6
LinkDB
All DBs
Position
Unknown
AA seq
95 aa
AA seq
DB search
MASLQGYVDHRVLLILQDGRAIVGVMAGFDQKSNVVLSDSKERVYSTEEGVEEIPLGLYL
VKGDQIVVIGELDEAADQAVDLSTIRAEPIPPIRY
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atggccagcctccaaggctatgtcgaccaccgtgtgttgcttatccttcaggacggccgt
gcgatagtcggtgttatggcaggtttcgatcaaaagtccaacgtagtgctatcggactcg
aaggaacgagtatacagcacagaggaaggcgtggaagagataccactcggactgtacctg
gtaaagggtgaccaaatcgtggtcataggcgagctggatgaggcggctgatcaggccgtt
gacctgtctacgatacgtgcggaacctattccacctattcgctattga
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integrated database retrieval system