KEGG   Phanerochaete carnosa: PHACADRAFT_251944
Entry
PHACADRAFT_251944 CDS       T03128                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
pco  Phanerochaete carnosa
Pathway
pco03018  RNA degradation
pco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHACADRAFT_251944
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHACADRAFT_251944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pco03019]
    PHACADRAFT_251944
   03041 Spliceosome [BR:pco03041]
    PHACADRAFT_251944
Messenger RNA biogenesis [BR:pco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHACADRAFT_251944
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PHACADRAFT_251944
Spliceosome [BR:pco03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PHACADRAFT_251944
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 18915366
NCBI-ProteinID: XP_007393327
JGI: Phaca1_251944
UniProt: K5V5P6
LinkDB
Position
Unknown
AA seq 95 aa
MASLQGYVDHRVLLILQDGRAIVGVMAGFDQKSNVVLSDSKERVYSTEEGVEEIPLGLYL
VKGDQIVVIGELDEAADQAVDLSTIRAEPIPPIRY
NT seq 288 nt   +upstreamnt  +downstreamnt
atggccagcctccaaggctatgtcgaccaccgtgtgttgcttatccttcaggacggccgt
gcgatagtcggtgttatggcaggtttcgatcaaaagtccaacgtagtgctatcggactcg
aaggaacgagtatacagcacagaggaaggcgtggaagagataccactcggactgtacctg
gtaaagggtgaccaaatcgtggtcataggcgagctggatgaggcggctgatcaggccgtt
gacctgtctacgatacgtgcggaacctattccacctattcgctattga

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