Phanerochaete carnosa: PHACADRAFT_259600
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Entry
PHACADRAFT_259600 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHACADRAFT_259600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_259600
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_259600
03009 Ribosome biogenesis [BR:
pco03009
]
PHACADRAFT_259600
03016 Transfer RNA biogenesis [BR:
pco03016
]
PHACADRAFT_259600
Enzymes [BR:
pco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHACADRAFT_259600
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PHACADRAFT_259600
Spliceosome [BR:
pco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PHACADRAFT_259600
Complex C
U4/U6.U5 tri-SnRNP related factors
PHACADRAFT_259600
Ribosome biogenesis [BR:
pco03009
]
Eukaryotic type
Pre-60S particles
Helicases
PHACADRAFT_259600
Transfer RNA biogenesis [BR:
pco03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PHACADRAFT_259600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
18917467
NCBI-ProteinID:
XP_007398015
JGI:
Phaca1_259600
UniProt:
K5VPG6
LinkDB
All DBs
Position
Unknown
AA seq
1076 aa
AA seq
DB search
MNSSDLFSFLDETPPEGDDYESEISSVHAMDTDDHSEVPKKRKAEEDSVSAPPADDAEPP
LDGENEAGPSDPKKPRMSSPNPMVTDEVEIEAKREVAASAGLQGSVEAGSKLELRHQVRH
QVAVPPGYPYIPIANHVPPAKPAREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVV
AEYAIARCLQNKQRVIYTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPSATCLVMTTE
ILRSMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEETIILLPHTVRYVFLSATIPNAM
QFAEWICKSHEQPCHVVYTDFRPTPLQHYLFPAGGEGIYLVVNEKGEFREDNFTKAMGML
QERQGEDPADPKGGRGRKGKTKKGGDKKGPSDIQKIIRMIMQKNYNPVIIFAFSKRECEA
LALTMTKFEFNSTDEQDMVTNIFNNAIDNLSADDRQLPQISNLLPLLKRGIGIHHGGLLP
ILKEVIEILFQEGLIKILFATETFSIGLNMPAKTVVFTAARKFDGREFRNLSSGEYIQMS
GRAGRRGLDDRGVVIMMCDEKLEPTAAKEMIKGEADRLDSAFHLGYNMVLNLMKVEGISP
EYMLERCFLQFQSNAGVPVLEDELRREEQKKASIVVSDEELVSEYYEYRQQLDQMAADFR
EVITHPSYSLPFLQPGRLVKIKYQDLDFGWGVIINYQKRQSPKNRPTPVAEDVPPHEQYV
VDVLLNCAFGGTLPKDRATTTPTPAGILPCPPGQKGDPQVVPVLLSTLESISHLRVHLPK
DIRSSQARETVWKTIQEVHRRFPDGIPLLDPVQNMHITDDKFKQLVKKIEIMEQKMFSSS
LHKDPRLPELYTLYKQKVSSQERMRELKRKIQATHDVLQMEELKARKRVLRRLGFTSSAD
IVDMKGRVACEISTGDELLLTELIFNGAFNTLSPEQSAGLLSCFVFTEKSEQQTRLKEEL
AAPLRVMQEIARRIAKVSKESKLPIVEDEYVQSFKVELMDAVVQWCRGASFSEICKLTDQ
FEGSLIRVFRRLQELIRQMSQAAKVIGNTELQEKFDKASEMLERPNSVIFCSSLYL
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaattccagcgacctattctctttcctcgatgaaacccctccagaaggggacgactac
gaatccgagatcagcagtgtgcatgctatggataccgatgaccacagcgaggttccaaag
aagcgcaaagcggaagaagatagcgtgtcagcacctcccgctgatgacgccgaaccccct
ctagatggagagaacgaagctgggccatctgaccctaaaaaacctcgcatgtcgtcgcca
aatcccatggtcaccgacgaagtggagatagaggcaaagcgagaggttgcggctagcgct
gggctccaaggttccgtcgaggcgggctcaaagctagagcttcgccatcaggtcagacat
caagtcgcggtgccacctggttatccttacatacctatcgcgaatcatgtacctcctgcc
aaaccagcacgagaatacaagttcacgctggaccccttccagcaagtgtcggtgcatgcg
attcagcgtaacgagagtgtacttgtgtctgctcacacgagtgcgggtaagactgtcgta
gctgagtatgcaattgcgcgctgtctgcagaataagcagcgtgtgatctacaccagtcct
atcaaggccctctcaaaccaaaagtaccgtgagatgctcgccgagtttggcgatgtcggc
ctcatgacaggagacgtcacaattaacccctcagcaacatgtctagtcatgactactgaa
atccttcggtcgatgctataccgtggttccgagattatgcgcgaagttgcctgggtcatc
ttcgacgagattcactacatgcgcgataaagagcgtggcgttgtctgggaagaaactatc
atcctcctcccgcatacagttcgctacgtctttctctccgccacgattcccaacgcaatg
cagttcgccgaatggatttgcaagtcgcatgagcagccgtgtcatgttgtctacaccgat
ttccgtcctactccactacagcactatctcttccccgcgggcggagagggtatctaccta
gttgtcaacgagaagggcgaattcagggaggataacttcacaaaggcgatgggcatgctc
caggagaggcaaggggaagaccctgcagatccaaaaggcggtcgcggacgtaaaggcaag
accaagaaaggtggagataagaagggcccttcagatatccagaagattatcaggatgatc
atgcagaagaactacaacccggtcattatcttcgctttcagtaagcgcgagtgtgaagct
cttgcactgaccatgaccaagttcgagttcaactccaccgacgaacaagacatggtcaca
aacatcttcaataatgcgatcgacaacttgtccgcggacgatcggcagcttcctcagatt
tccaatcttctccctctcctcaagcgtggcatcggcatccaccacggtggtctacttcct
attctcaaggaggtcatcgagattcttttccaagaaggtctgatcaagatccttttcgcc
accgaaacgttctccattggtctgaacatgcccgcgaagactgttgtcttcaccgcagca
cgcaagtttgacggtcgcgagttccgcaacctctcgtccggagagtatatccagatgtct
ggtcgtgctggtcgtcgtggtctcgatgatcgcggtgtggtcatcatgatgtgcgacgaa
aagctcgagccgactgctgcgaaggagatgatcaagggcgaggccgaccgacttgactcc
gcattccacctcggctacaatatggtcctcaacttgatgaaggtcgagggcatcagtccc
gagtacatgcttgaacgctgctttctccagttccagagcaacgctggggtcccggttttg
gaagacgagcttcgcagggaggaacaaaagaaggcttctatcgttgtttccgacgaggaa
ctcgtatccgagtactatgaataccgacagcaactagatcagatggctgctgacttccgc
gaagtcatcacgcaccctagctatagccttcccttcctccagcctggtcggcttgtcaag
ataaagtatcaagacctggactttggctggggtgtcattatcaactatcaaaagcgccag
tcgccgaagaatcgacctacgcccgttgcagaggatgttccgccacatgaacagtatgtc
gtcgatgtcctcctgaactgcgcattcggtggtacccttccgaaagatcgtgcgacgacc
actccgacgcctgctggcattctgccctgtcctccaggtcagaagggcgatccgcaggtc
gtccccgtgctactatccacacttgagtcgattagccatctccgtgtccacttgccgaag
gacatccgctcctcacaggcgcgtgaaacagtgtggaagaccatccaggaggtgcaccgg
cgtttcccagacggcattcccctgctggatcctgttcagaacatgcatattaccgatgac
aaatttaagcagctggtgaagaaaatcgagatcatggagcaaaaaatgttctcgagctcg
cttcataaggatccgcggctaccagagctgtacacgctatacaagcagaaagtcagctct
caggagcggatgcgggagcttaaaaggaagatacaggcgacgcacgatgtgctgcagatg
gaagagctcaaggcacgaaagcgcgtcttacgccgtctcggcttcaccagctcggccgac
atcgtcgacatgaagggccgtgtggcgtgcgagattagcactggtgacgaactgctatta
acagagctaatcttcaacggtgcctttaataccctctcgcccgagcagagtgctggtctc
ctcagctgctttgtcttcacagaaaagagcgagcagcaaacacggctgaaggaagagctc
gctgctcctcttcgcgtcatgcaagagattgcacggcggatagccaaggtgtcgaaagaa
tcgaagctgcccatcgtcgaagacgagtacgtgcagtcgttcaaggtcgagctcatggac
gcagtcgtgcagtggtgccgcggcgcgtcgttctccgagatctgcaagcttaccgaccaa
ttcgaaggaagtttaatccgtgttttccgccgacttcaagagctcatccgccagatgagc
caagccgcgaaggtcattggcaacacggaactgcaggaaaagtttgacaaggcgtcagag
atgctggaaaggccaaactcggtcatcttctgctcttcgctctatctctag
DBGET
integrated database retrieval system
