Phanerochaete carnosa: PHACADRAFT_263266
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Entry
PHACADRAFT_263266 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
pco
Phanerochaete carnosa
Pathway
pco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PHACADRAFT_263266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_263266
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
PHACADRAFT_263266
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
18918510
NCBI-ProteinID:
XP_007400386
JGI:
Phaca1_263266
UniProt:
K5VWQ4
LinkDB
All DBs
Position
Unknown
AA seq
204 aa
AA seq
DB search
MSNTIALYPLSNFTFSTKEAQPEEDPSVSARLQRLQNNYEDFGMRRTVEGVLVVHDHGHP
HILMLQIANAFFKLPGDYLKPGEDEIEGLKKRLDDRLAPPQDSRQFNASHGVDNDWEIGD
CLAQWWRPNFETFMYPFIPAHITKPKECKKLFLVQMPERKVLAVPKNMKLLAIPLFELYD
NAARYGPQLSAIPHLLSRYNFIYQ
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaataccattgctttatacccactctcgaactttaccttcagcacaaaagaggcg
cagcctgaggaggacccatccgtttccgcgcgtctgcagcgcctgcagaataactatgag
gactttgggatgcggcggaccgtcgaaggcgtcctggtcgtgcacgaccacgggcacccg
cacatcctgatgctccagattgcgaacgcgttcttcaagcttcctggcgactacctcaag
cccggcgaggacgaaatcgaggggctcaagaaacggctcgatgaccgcttggcgccgccg
caggactcgcgccagttcaacgcgagccacggcgttgacaatgactgggagatcggcgac
tgcctcgcgcagtggtggaggcccaatttcgagacgttcatgtacccgttcatccccgcg
catataacgaagcccaaggagtgtaagaagctgttcctggtccagatgcccgaacgaaag
gttcttgccgtcccgaagaacatgaagctcctcgccatcccactcttcgagctctacgac
aatgcggctcgctatggcccacagctttctgcaatcccgcacctcttgtctcgctataac
ttcatctaccaatag
DBGET
integrated database retrieval system