Phanerochaete carnosa: PHACADRAFT_28301 Help Entry PHACADRAFT_28301  CDS       T03128                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism pco  Phanerochaete carnosa Pathway pco03013   Nucleocytoplasmic transport pco03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:pco00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     PHACADRAFT_28301    03015 mRNA surveillance pathway     PHACADRAFT_28301  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pco03019]     PHACADRAFT_28301 Enzymes [BR:pco01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      PHACADRAFT_28301     5.6.2.5  RNA 5'-3' helicase      PHACADRAFT_28301 Messenger RNA biogenesis [BR:pco03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      PHACADRAFT_28301    mRNA cycle factors     Common to processing body (P body) and stress granule      PHACADRAFT_28301 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII Viral_helicase1 UvrD-helicase DEAD SLFN-g3_helicase Helicase_RecD NPHP3_N PIF1 AAA_22 AAA_16 nSTAND3 PhoH SRP54 ATPase AAA_25 Motif Other DBs NCBI-GeneID:  18919539 NCBI-ProteinID:  XP_007395231 JGI:  Phaca1_28301 UniProt:  K5VUN4 LinkDB All DBs Position Unknown AA seq 1067 aa AA seqDB search MDSFENYQYDSASSYGGISIVDDTSSVYTVNTSQSNVPLDLDSLSITDDRSVVASPNGHS HHSHSQNANADGIDEDFDAVLDDLKDEGQVDLPPHACSYCGIHSPASVVKCLVCQKWFCN SRGNTSASHIVNHLVRAKHKEVILHAESPLGETIPECYNCGSKNVFMLGFIPAKSDTVVV LLCRQPCAAVSKDISWNASLWAPLIDDRSFLSWLVKPPSETEQLRSRQISFQQINRLEDL WRENTSATLEDLDKPGVDDEPQPILLRYEDAYQYQNIFGPLVKIEADYDKRLKESQTQTD ISVRWDLGLNQKRVAWFCLPKLESGEVRLAVGDELRLKYTGTLHKPWEGDGHVVKIPNNV SDEIGLELRRSEGVPVDITHNYTVDFVWKSTSFDRMQLAMKTFAVDEKSVSGYIYHKLLG HELEPQTLRTQMPKRFSAPGLPELNHSQMYAVKSVLQKPLSLIQGPPGTGKTVTSASTVY HLAKMNPGQVLVCAPSNVAVDQLTEKIHATGLKVVRLTAKSREALDSSVAFLTLHQQVAN NTTHVELQKLIQLKNEQGELSSNDERKYKALIRQCEKEILSAADVICCTCVGAGDPRLSK LKFRTVLIDEATQAAEPGCKQVVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVVLGNRP IRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWPVPDTPMFFYQNLGQE EISSSGTSFLNRTEASNVEKIVTKFFKSGVVPNQIGVVTPYEGQRSYIVNYMQFNGTLKK DLYKEIEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGVVILGN PKVLSKHPLWHYLLTHYKEKNCLVEGPLNNLQPSMIQFSKPRRTLSKAMDQFRRHETNAK DYLSTGVMSDARRSGTPSRFDASFYRTHDALGYIPSDVQSLRSQATYSSGLPMFGAGTPF GPGMQRPNGGKRSTYGSYASSIISQDAGVNGNDTASVIGSTVGTDRASSVAYSQSDRLRR RTSFSSVAGASDMGSLSQYDYKSQDDGTDMDDMKSQYTGTQSGVTVF NT seq 3204 nt NT seq  +upstreamnt  +downstreamnt atggattctttcgaaaattaccaatatgattctgcatcgtcttatggcggaataagcatt gtcgacgatacctcatccgtctacaccgtcaacacaagccagagcaatgttccactcgat ctggacagcctttcgataactgacgaccgctccgtcgttgcatccccgaacggccatagt caccattcgcactcgcaaaatgcgaatgcagatggcatcgacgaggattttgatgccgtt ctggatgacctcaaagacgaggggcaggtagatttgccgcctcatgcttgcagttactgt ggcatccactcccccgcttctgtcgtcaaatgtctcgtctgccaaaaatggttttgcaat tctcgtggcaacacgtctgcttctcatatcgtgaatcacctcgtgcgggcgaagcataag gaagtcatacttcatgccgaatcccctctcggcgaaactatacccgaatgctacaactgt ggaagcaagaacgtgtttatgctcggattcattcccgcgaagagcgacaccgttgtcgtc ctgctgtgccgtcagccttgtgctgcggtctcgaaagatatctcttggaacgcatccctt tgggcccccttgatcgacgatagatccttcttgtcctggctggtgaagcctcctagcgaa accgagcagctccgttcgcgccagatttcgttccaacagatcaaccgtctcgaggatctg tggcgagaaaacactagcgccacccttgaagatctcgacaagcctggcgtggacgacgag cctcagcctatcttgctccgctacgaggatgcttatcagtatcagaatatcttcggtccc ctcgtcaagattgaagcagattatgacaagaggttgaaggagtcgcagacacagacggat atctccgttcgttgggatctcggtctcaaccagaaacgcgtcgcttggttttgcctccct aagcttgaaagtggcgaggtccgactagctgtcggcgacgaactcaggctaaagtatacc ggaaccctgcacaagccctgggaaggcgatggccatgtcgtcaagatcccaaacaacgtc tctgatgagatagggttggagctgagaagatcggagggtgtcccggtggatatcacgcac aactatactgtagacttcgtttggaagtcgactagttttgataggatgcagctcgcgatg aagacattcgcagtcgacgagaagagtgtcagcggttacatctaccacaagctgcttggt catgagctcgaaccccagaccctacggacgcagatgccgaagcgattctccgctcccggc cttccggagctcaaccactcccagatgtatgcggttaagagcgttctccagaagcctctt agtctcattcagggaccacccggaacaggcaagaccgttacttccgcttcgaccgtctat catctcgcgaagatgaaccctggccaagtcctcgtgtgcgcgccgtcgaacgttgccgtc gaccagctgactgagaagatccatgctactggtctcaaagtcgtccgtctcaccgcgaag tctcgtgaagccctcgactcctctgtcgccttcttgactctacaccagcaggttgcaaac aacactacgcacgtcgaactccagaagctcatccagctcaagaatgagcaaggcgagctc agttcgaatgacgaacggaagtacaaggccctcattaggcaatgcgagaaggagatttta agtgccgcggatgtcatttgctgcacctgcgttggagcgggtgaccctcgtctcagcaaa ctcaagttccggacggttctcatcgacgaagccacgcaggctgccgagccaggatgcaag caagttgtgttggttggcgatcaccagcaacttggccctgttatcatgaacaagaaagcg gcccgtgctggtctcacgcagtcactcttcgagaggctcgtcgtcctcggcaatcggccc atccgcctccaagtgcagtatcgtatgcatccttgcctctccgagttcccttcgaacatg ttctacgagggaacacttcagaacggagttacggcgccggaacgccttcgcaagaacgtg gacttcccgtggccggtgcctgatacgcccatgttcttttaccagaatttgggtcaggag gaaatctcgtccagcggaacatcattccttaacaggacggaagcgtccaacgttgagaag atcgtgaccaagttcttcaagtctggtgtcgtcccaaaccagatcggggtcgtcacaccg tacgagggccaacgctcgtacatcgtgaactacatgcagttcaacggcaccctcaagaag gacctgtataaggaaatcgaggttgccagcgtagacgcttttcagggccgtgagaaggac tacatcatcctcagctgtgtgcgcagcaacgagcatcaaggcattggtttccttaatgac ccgaggcgtctaaacgttgccctcacgcgcgcgaaatatggtgtcgtcattcttgggaat ccaaaagtccttagcaagcaccccctctggcactatctccttactcattacaaggagaag aattgtcttgttgaggggccgctcaacaacctacagccaagcatgattcagttcagcaag ccgaggcgcacgctatctaaagctatggaccagttccggcgtcatgagacgaacgcaaag gattacctgagcaccggggtgatgagcgatgctcggcgttcgggtactccgagtcgcttc gatgccagcttctatcgcacgcacgatgcgcttggttacatcccctcggatgtgcaatcc ctccgatcgcaggcaacgtattcctcagggttgccgatgttcggtgcaggcacgcccttc ggccccggtatgcagcgacccaacggaggcaaacgcagcacctatggaagttacgctagt tccatcatctctcaagacgccggtgtgaacgggaacgatacagcaagcgtcatcggcagc accgtgggcaccgatcgcgcttcttccgtggcctattcgcagtccgatcgtcttcgtcgc cgcacatctttctcttccgtggcaggcgcctcggacatgggcagcttgtcgcaatatgac tataagagtcaggacgacggcaccgacatggacgacatgaaatcacagtacaccggcacc caatcaggcgttaccgtcttctag

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