Phanerochaete carnosa: PHACADRAFT_31805
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Entry
PHACADRAFT_31805 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12855
pre-mRNA-processing factor 6
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_31805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_31805
Spliceosome [BR:
pco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PHACADRAFT_31805
Complex C
U5 SnRNP specific factors
PHACADRAFT_31805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
PRP1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_19
TPR_16
Suf
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
TPR_2
TPR_17
TPR_1
TPR_11
TPR_8
TPR_9
TPR_6
TPR_CcmH_CycH
ARM_TT21_N
NatA_aux_su
TPR_21
FAT
Motif
Other DBs
NCBI-GeneID:
18919697
NCBI-ProteinID:
XP_007399273
JGI:
Phaca1_31805
UniProt:
K5UQC4
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MATNKTNKLAFLSMPAPASYVAGLGRGASGFTTRSDIGPAREGPSAEVIAEAQARRGEEP
DYDPDQFQDPDNEYGLFAGTTYEADDEEADKIYEQVDQNMDARRRIRREVRENLELAKHR
AERPKIQQQFSDLKRGLSAVTDEEWENIPEVGNLTRKKRKRDERSFVVPDSVLVGDRSRG
EYENALDARQQEAGGFETPAENGTLTNFVEMGQARDKILSLKLDQVSGTSTASGLATSVD
PKGYLTSLDSVILKTDAEIGDIKRARMLFDSLVKSNPKHSPGWIAAARLEEHAGRMVAAR
KLINAGCEQCPKSEDVWLEASRLHNNDDAKVILANAVQHVGQSVKIWLAAADLEHDIKAK
KRVLRKALEHIPNSVRLWKETVNLESSAADARIILQRAVEVIPLSVELWLALARLETPDK
AQAVLNKARKAVPTSHEIWIAAGRLMEQQATLPERSEEERNKELDAVDTIIERGVRNLRQ
HQVLLTREQWLKEAEKCEEDGSPRTCEAIIKATVAMDVEEEDRLDTWTGDAEAAESRGRI
GTARAILAYALRVFPDKRSLWRRAADLERTHGTRDSLVAILERAVHHVPQAEVLWLMWAK
EKWLARDVPAAREVLEKAFVANPESEQIWLAAVKLEAENGELGVARELLVRARTVADTQR
IWMKSAVFERQQGKLSTALETLEIALKKYPKFAKLYMIQGQIHQSQGKYAAARASFAAGI
KQCPKDVTLWILSSRLEEADGKSIKARALLDKARLANPGSDLLWAEAIGVEERSGGAAQA
KTVLSRGLQECPSSGLLWSMAIWQEPRPTRKSRSADALRKAADDPLIICTVARLFWNERK
IEKARQWFERAVKINPDLGDVWAWWLKFERQHGTREHQEEVIKRCVAAEPHHGQIWQALA
KDMENTGKSTRDVLELVAAELK
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaataaaacaaacaagctcgcttttctgtccatgccagctccggcatcctat
gttgctggtcttggacgaggcgcttcgggtttcacaactcgttcggatattggtcctgct
cgcgagggaccgtctgcagaagttattgcagaggcgcaggcgcgtcgcggcgaagaaccc
gactatgatcccgaccaatttcaagaccccgataacgagtacggtcttttcgcgggtact
acatatgaggcagatgacgaggaggccgacaagatatacgagcaggtagaccagaacatg
gacgccaggagacggatcaggcgagaagtgcgggagaatctagaacttgcgaagcatcgt
gccgagcgtcccaaaatccagcaacaattttccgacctaaagcgaggcctctcagccgtg
acagatgaggagtgggagaacattccagaggtgggcaatctcaccaggaaaaagcgtaaa
agggacgagagatcattcgttgtaccggacagcgttctcgtgggcgatcgttcaaggggt
gaatacgagaatgcgttggatgccagacaacaagaggccggtggcttcgagactcccgca
gagaatggtactttgacgaacttcgtggaaatgggacaagcccgtgacaagatcctttct
ctgaagctcgaccaggtctctggaacgtcaactgcttccggccttgcaacgtctgttgac
cccaaaggctatctcacctcactggacagtgtcatcctgaagaccgatgccgaaattggc
gacatcaagcgtgcccgtatgctcttcgactcactagtgaagtccaacccgaagcattca
cccggatggattgctgcagctcgtctggaagaacatgctggccgaatggtagctgcacgc
aaactgattaacgcgggttgcgagcagtgccccaaaagcgaagatgtttggcttgaggcc
tctcggctgcataataacgacgatgcgaaagtcattctcgcaaacgctgttcaacacgtt
ggccaaagcgtgaagatctggcttgccgctgccgatttggagcacgacatcaaagccaag
aagcgagttctgcggaaagccctcgagcacattcccaactcggtccgactctggaaagag
acggtcaacttggagtcgtcagctgcagacgccaggattatacttcagcgcgcagtcgaa
gtcatcccgctttccgtcgagctgtggctggcgttagcacgtctcgaaaccccggacaag
gcacaggccgtcctcaacaaggctcgtaaggccgtcccgaccagccacgagatttggatt
gctgccggccggctcatggagcagcaggcgacgctacccgagaggagcgaagaggagcgc
aacaaggagctcgacgccgtcgacacgatcatcgagcgtggtgtgcgcaacctccggcag
caccaggttctcctcacgcgcgagcagtggctcaaggaggccgagaaatgcgaagaggat
ggctcgccgaggacgtgcgaagcgatcataaaggcaaccgttgcgatggacgtcgaggag
gaggaccgtctcgacacctggacgggcgacgcggaggctgccgagtcgagaggccgcatc
gggactgcgcgtgccattctcgcgtacgccctcagggtgttccccgacaagcggtcgctt
tggcggcgcgcagccgatctcgagcggacacatggcacgcgcgattccctcgtcgccatc
ctggagcgcgcggtgcaccacgtaccgcaggctgaggtgctttggctcatgtgggcgaag
gagaagtggctggccagagatgtccctgctgcacgcgaggtcctcgagaaggcgttcgtt
gcaaatcccgagagcgagcagatctggctggctgctgtcaagttggaggcagagaacgga
gagctcggtgttgctcgagaactgctcgttcgcgcgcgaaccgtagccgatactcagcgg
atctggatgaagtcagctgtcttcgagcggcagcaagggaaactgtcgaccgcgctggaa
actctcgaaatcgccctgaagaagtatccgaagtttgcaaagctgtacatgatccaaggt
caaatacaccagtcgcagggcaaatacgccgcagcgcgcgcctctttcgcggccggcatc
aaacagtgccccaaggacgtcaccctctggatactctcgagccgactcgaagaagccgac
gggaagagcattaaggcccgtgcgctgcttgacaaggcccggctcgcgaacccgggcagc
gatctgttgtgggccgaagccatcggcgtcgaggagcgcagcggcggtgccgcacaggcg
aagaccgtgctctcgcgcggcctgcaggagtgcccgagctcgggtctgctatggtcgatg
gcgatctggcaggagccgcgaccgacacgcaagtcgcggtcggcggacgcgctgcgcaaa
gcagcggacgacccgctcatcatctgcaccgtggcgcggctgttctggaacgaacgcaag
atcgagaaggcgaggcagtggtttgagcgtgcggtcaagatcaatcctgacctaggcgac
gtgtgggcatggtggctcaagttcgagagacagcatgggacgcgggaacatcaggaagag
gttatcaagcgatgcgtggctgcagagcctcatcacgggcagatctggcaggctctcgcg
aaggatatggagaacacaggcaagagcacaagggatgtcttggagcttgtcgctgctgag
ctgaaatga
DBGET
integrated database retrieval system
