Phanerochaete carnosa: PHACADRAFT_61321
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Entry
PHACADRAFT_61321 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pco
Phanerochaete carnosa
Pathway
pco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PHACADRAFT_61321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pco03021
]
PHACADRAFT_61321
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_61321
Transcription machinery [BR:
pco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PHACADRAFT_61321
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PHACADRAFT_61321
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
TFIIA
Motif
Other DBs
NCBI-GeneID:
18920165
NCBI-ProteinID:
XP_007391764
JGI:
Phaca1_61321
UniProt:
K5W5J5
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
PSSYYQQPPPPPTPQHVYYADPNYFRRDYVARLADLTVNSRPIIQTLSMIAQEYSRYADI
VVSCIEQHIRRVPPWMKLPAFYLLDAISKNVYEPYARHFNSVVVKLFLDTYEQVDQSTRG
KMEEMLLTWRTGAPNGRELFGPIAQVAIERQIWGGEDSPVSAAQVLSELEFVLSAKQRSL
QTNPYDKQTQNHVSVLYQLRKLVQTGVSQEELAQILTQLRTMSPAQPSVHQHVAPTPHVP
QVPYQVPAPATQPPVQPAYPPVQPSYLPQPSYSAVYPPVKTEAAPAPVPPTQPVASTSSA
AGSSTASVVPSNISSILSSLLKSGVLSSSGTPVGAGSSTEARESTPSTDAKDTTQEYRNA
ILSVNIRLTSTDIINRQRPPITKFLYESLPSQCKQCGIRFPGDATGKKKMQDHLDMHFNQ
NRKASQAVGRGYSRGWFVNIDDWLHDGAVDTKGKGRADGSRVNGKTLAAEEAAKRDAELR
AMFVVVPPGDEAKSISCPICKETLKSEFMEDDEEWVWRNAVKKDDRIYHATCHAEAMSSK
TTLASRLRSEISGSRSRSRTPESARTAHEDGKSRLSRSPPGSPTKAMVGTKRKAEDDEVI
AKDQERTSLTPPSKKLAISS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
ccatcgagctactatcagcaacctcctcccccaccaaccccccagcacgtttactatgcc
gatcccaactatttccgtcgggattatgtagcacgtctcgctgacctgaccgtcaactct
aggccaatcattcagaccttgtcaatgatcgcacaggaatattctcgctacgccgatatc
gtcgtcagctgcatcgagcagcacatccgacgggtgccgccatggatgaagttgcccgcc
ttctacctccttgatgccatttcgaagaatgtgtacgagccctatgctcgccatttcaac
tccgtcgtcgtcaagctgttcctcgacacgtatgagcaggtcgaccaaagcactcgcggc
aagatggaagagatgctcttaacttggcgaactggcgctcctaatgggcgagagctgttc
ggccctatcgctcaagtggccatcgaacgacaaatctggggcggggaagatagccctgtc
tctgcggctcaagtcctcagcgaactcgagttcgtgctgagtgcaaagcaacgctccttg
cagacgaatccgtacgataaacagacgcagaaccacgtttcagttttataccagctccgg
aagcttgtgcaaaccggtgtctcgcaagaagagctagcacagattctcacccagctgcgt
acgatgtctcctgcacaaccatctgtacaccagcatgtagcaccgacgccccatgtacca
caagtaccatatcaagtaccagcacctgctactcagccccccgttcagcccgcctatcca
cctgtgcagccatcatatctgcctcagccatcatactctgctgtgtatcctcctgtcaag
actgaggcagctcctgcaccggtcccaccaactcagccagtggcatctacgtcgtcggct
gccggttcctctactgcatctgttgtcccttccaacatctcctcaatattgagctcgcta
ctcaagtcgggggttctgtcgtcgtcgggcacacctgtcggcgccggttccagcacagaa
gcgcgggagagtacgccatccactgatgccaaggacactacacaggaatatcggaatgct
atcttatctgtcaatatccggctgacgagcaccgacatcatcaacagacagcgcccaccg
atcaccaagttcctgtacgaaagtttgcccagtcaatgtaagcaatgtggtattcgattc
cctggtgatgctaccggcaagaagaagatgcaagatcacttggacatgcacttcaaccaa
aaccgcaaggcgagtcaggcggttggccgtgggtatagccgcggttggtttgtcaatatt
gacgactggttgcatgacggagcggtagataccaaaggcaaaggtcgtgctgatggctct
cgcgtgaatggaaagacacttgcggctgaggaggctgccaagcgtgacgctgagttgcga
gcgatgttcgttgtcgttccgcctggtgacgaggccaagtccatatcatgtccgatctgt
aaggagactctgaagtctgagtttatggaggacgacgaggagtgggtgtggcgcaatgcg
gttaagaaagatgataggatatatcacgctacctgccacgccgaagccatgtcatcaaaa
acaactttagcctcgcgtttgcgatctgagatctctggcagccgcagcaggtcgcggaca
cctgaaagcgcacggacagcacatgaggacggaaagtcacgactgtcgcgatcaccgccg
gggtcgccgaccaaagccatggtgggtacgaagcggaaagctgaagacgatgaggtgata
gcgaaggaccaagagcgaacgagcttgacaccaccatcgaagaagctagcgatatcctca
DBGET
integrated database retrieval system
