Phanerochaete carnosa: PHACADRAFT_93212
Help
Entry
PHACADRAFT_93212 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
pco
Phanerochaete carnosa
Pathway
pco03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
PHACADRAFT_93212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pco03021
]
PHACADRAFT_93212
03019 Messenger RNA biogenesis [BR:
pco03019
]
PHACADRAFT_93212
Transcription machinery [BR:
pco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
PHACADRAFT_93212
RNA polymerase I system
PHACADRAFT_93212
Messenger RNA biogenesis [BR:
pco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
PHACADRAFT_93212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOWx_SPT5
Spt5-NGN
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
Spt5_N
KOW
KOW1_SPT5
KOW7_SPT5
CTD
DUF4438
Motif
Other DBs
NCBI-GeneID:
18920826
NCBI-ProteinID:
XP_007394795
JGI:
Phaca1_93212
UniProt:
K5V327
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MSDIEEDPVMNQEENNEEEYGEEAPRQSKSKDKRRDYDDEEDEDEEEDEEDEEDEEDEED
EEEDPGTERGKKRAKVRPYPFATHRHKRPAVNRFLDVEAEVDEDEEEDEDEDEYGRDEFI
AEGVEGEEGDFAPRAAVNARLNLERELNDQDLQKIAAGFSERYRQRNVRYTGDMNEVPQR
LLMPSVHDANLWQVRCKPGKERDLVFSLMRKSLDLEFTNRPLQILSAFQRDSLPGMIYVE
ARSAKMVQEACNGLVGIFPSRGINLVPIEEMSSLLQIKKQDVTVAPGSWVRIRRGKYQGD
LAQVMDITENGEEVGLKFIPRIDLNPKDEPMGLDKKRKKPVPGSSGFSMRPPQRFFNYEE
AVRVYGRKAVSKRNQVYVFQNDTYKDGFIEKDFKISALQLDDVNPTLDEITQFTRGQDGA
DNDANVDLSIIAEASKKAAIAVLQPGDHIEVFEGEQAGVHGTVHAVEQDVVTIQPVGVEF
DGQKIQIPARSVRKRFKAGDHVKVMTGQNADETGLVVSVMDNVVTFLSDMTMQEVSCFSK
DLREAAEVGTGTNTVGNYELHDLVQLDLQTVGVIFKTERDSFRVLDQNGQVRLVKPHQIS
MRRDTHRAIAVDSEGHEIRVHDNVKEVEGEGRKGRVLHTYQAFYAWLFNRDVAENGGVFV
TRARSLAPVTPRGLKLGSTDLSKMNPALSGGAQGGMVGGDMGRGPRDRLIGATVQVIQGP
QKGIVGIVKDTNGNIARVELSTGNKIIMIPKDKLKRRNIDGSLEMIDVPRIPLGLPNIPL
GLPKIPGMSAWGASPGGGRTPNPYQGGGRTANPYSGSQTPAWGGGMDSRTPNPHHPAKTP
AWSASAKTPNPYADGKTPAWSASSRTPNPYASTGGWGGSTPKPSSWGGATPAPNGASSSW
GGATPARPGWGGATPRADWGESSSSWSAPTPSAWSAPTPGISAPTPGAWTGGAYGAPTPG
VSSSYDDVRTPAAFGLNGGQPSRSSEESK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacatcgaggaggatcctgtgatgaaccaagaggagaataacgaagaagaatat
ggcgaggaggctccacggcagagcaagtccaaggacaagcgcagggactatgatgacgaa
gaggatgaggatgaggaggaagatgaggaggacgaagaggacgaggaagacgaggaagac
gaagaggaggatcctggtacagagcgcgggaagaaaagagctaaggttcgcccttaccca
ttcgccactcaccgtcataaacgacctgctgtcaaccgtttccttgacgtagaagccgag
gttgacgaagacgaggaggaggacgaagatgaggatgagtatggccgtgacgagttcatt
gccgaaggtgtggaaggcgaagagggcgactttgcgccccgtgctgcagtgaatgccagg
ttgaatcttgagcgcgagctcaacgatcaggacttgcagaagatagcagcaggcttcagt
gaacggtatcggcagcggaatgttcgttatacgggagacatgaacgaagtgccacagcgg
ctgctcatgccttccgtgcacgacgccaacctctggcaagtgcgatgcaagcctgggaag
gaacgagaccttgtgttcagcctcatgcgaaaatcactcgacctcgaattcacgaatcgg
ccgctacagatattgtccgcttttcagcgcgactcgctacccggtatgatatatgtagaa
gctcgcagcgcgaagatggttcaggaggcatgcaatgggctggtcggcatcttccctagc
agaggcatcaaccttgtacccattgaggagatgtccagtctactgcaaataaagaagcaa
gacgtcaccgtcgcccccggaagctgggtccgtatcaggcgtggcaagtaccagggagac
ctggcgcaagtcatggacataacggagaatggggaagaggttggcttgaagttcattcct
cgcatcgacctcaaccccaaggatgagcctatgggcttggataagaagcggaagaaacct
gttccaggttcctcgggtttctccatgcgaccgccccaacgtttcttcaactacgaggaa
gctgtcagggtgtatggcaggaaggcggtatctaagcgtaaccaagtctacgtcttccaa
aatgacacgtataaggacggcttcatcgagaaggacttcaagatttctgcccttcagttg
gacgatgtcaaccccacacttgacgagatcacccagttcacgcgcgggcaagacggtgcg
gacaacgacgcaaacgtagatctctccatcatcgccgaagcttcgaagaaggccgctatc
gccgtcttgcagcctggcgaccatattgaagttttcgagggcgagcaggccggtgtccac
ggtacagtgcatgccgtggaacaggatgtcgtcacgattcaacctgttggagtggagttc
gacggccagaagatacaaatccctgcgcgcagcgtgcgcaagcgcttcaaagctggcgac
cacgttaaagtcatgactggtcagaacgccgacgagacaggtcttgtagtctcggtcatg
gacaacgtcgttactttcctttccgacatgaccatgcaagaggtctcttgtttctcgaaa
gatcttcgagaggcggcggaggttggcacaggtaccaacaccgttggtaattacgaactg
catgaccttgttcagcttgacctccaaaccgtgggagttatctttaagactgagcgcgac
tcgttccgggtgctggaccagaatggtcaagttcgtctcgttaagcctcaccagatttca
atgcgtcgtgatacgcatcgtgccattgcggtcgactccgaagggcatgagattcgcgta
cacgacaatgttaaggaggttgagggcgagggccgcaaagggcgtgtgctgcacacttat
caagcattctacgcttggttgttcaaccgtgatgtagccgaaaatgggggcgtcttcgtc
actcgtgcccgttcgctcgcgccagtgaccccacggggtctgaagttgggctctactgac
ctctcgaagatgaatccggcactcagtggcggtgctcaaggagggatggtcggcggagac
atgggtcggggaccgcgggatcgactcattggagcgacggtccaagtcatccaggggccg
cagaaaggtattgttggtattgtgaaagacacaaacggtaacatcgcccgtgtcgagctc
agcactggcaacaagatcattatgatcccgaaggataaattaaaacggagaaacattgac
ggttctctcgaaatgatcgatgtaccccggattcccttaggtctgcccaatatcccccta
ggcctacccaaaattcctggcatgtctgcctggggagctagtcctgggggcggcaggaca
cccaacccttaccagggcggtggtcgtacagcgaatccatactctggttcccagacgccg
gcttggggcgggggcatggactcgcgcacacctaatccacatcatcctgcgaagacccca
gcgtggagcgcgagtgctaaaacgccgaatccgtatgcagatggcaagaccccggcatgg
agcgcatcgtctcgcacgccaaacccgtatgcctcaactggtgggtggggaggctcgacg
ccgaaaccatcatcttggggcggcgcgacgcccgcgccgaacggtgcctcgtcctcatgg
ggaggtgcaactccggcaagacctggatggggcggcgcgacacccagggccgattggggg
gagtcgtcttcgtcatggagtgcgcctaccccatctgcatggagtgcaccaacaccagga
atctctgcgccgacacctggcgcctggaccggtggtgcctacggcgcccctacgcctggg
gtatcatcttcctacgatgacgtccgcacaccagctgcgttcggcttgaatggagggcag
ccttcgagatcctcggaagaaagtaagtag
DBGET
integrated database retrieval system
