Pectobacterium colocasium: PJ912_04585
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Entry
PJ912_04585 CDS
T08961
Name
(GenBank) pectate lyase family protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pcoa
Pectobacterium colocasium
Pathway
pcoa00040
Pentose and glucuronate interconversions
pcoa01100
Metabolic pathways
pcoa02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pcoa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PJ912_04585
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PJ912_04585
Enzymes [BR:
pcoa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PJ912_04585
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
WED69308
LinkDB
All DBs
Position
complement(843046..844614)
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AA seq
522 aa
AA seq
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MFRAVIGTGRLRTCAVAIVFSGLVLSGCDNSQQPVAEAAPPDLQVKTAPFGWTAQYQNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPLYIAGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYADAEYYKTKPNKTTFDFDLYVKAFDQDYMAQLKATADAGGSDAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDASDGDKGNWNARYDAVSINASKNVWVDHCTFTDGEHPD
YQEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFAQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGGA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSTLQDAEKAAATNSGKAVPAWAL
ETCTNELEWSPPYAYSAGKSIAAVEKYVLENAGAGKLEIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcggttattgggactggtcgtttacgcacctgtgcggtagctattgtcttt
tctgggctcgtactttccgggtgtgataatagtcagcagccagtggcagaagcggcaccg
ccagatttacaggtgaaaacggcaccgtttggctggactgcacaatatcagaatacggat
ggtaaattttatgcaacgacggggggcgaaggcgcacatgaaaatagcatttatgtcgtg
actagccgccaggaattaaaagatgcgttaaataatatacgcagtcctctttatatcgca
ggcgatgccgatgcggagttgaaggcaaaattagaacccaaaattatctactggcaaggc
actatccgcggcgatgatttaggtaatggacgctatgcggatgctgagtattataaaact
aagccgaataaaacaacgtttgattttgatttatatgtcaaagcgttcgatcaggattat
atggcgcagttgaaagcgacggcggatgcgggtggcagcgatgcggcggcggctagcgct
gaacttagcctgcttaagaagcaaaatggtcaacgttcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccaccgaataccactattttaggcgtgggtagcgaagcg
aagctggtggaaggctatttatccctcaacaccttaagccacacgtttggcaaaacggat
aacagcaacatcattatccgtaatattacgttccaggctccgcgcgattttgccccggcc
tgggatgccagcgacggtgataaaggaaactggaatgcccgttatgatgcggtatcgatt
aatgccagcaaaaatgtctgggttgatcactgcacctttacggatggtgaacatcctgac
tatcaggaaccagtgttatttggcaagcatatccaacgccacgatggtttgctggatatc
gaagatggggccgactacctgacgatttcctacaacattttcgcccagcatgacaaaacg
gtattaattggctctggtgatggtgataaaggggaataccgaatcacttttgaagggaat
ttatgggacaacagcgtgcagcgttcgccgcgagtgcgctttggtcaggtgcatttgctc
aataactaccatcgtggggcaacggatacgaattaccctattctgtatgccattgggatg
gggttcgattcatccattctttccgaaagtaacgtgtttaatttccagggcggcggcgcg
gatgaaaagctgattattggcgcctacaagggaagcaaatttaaagacaacggctcctgg
ttcaatggcaacccggcaagtaatttgaatcaaatcgcattagacaaatgcagcacattg
caagacgccgagaaggccgccgctacgaattctggcaaagcagtacccgcatgggcgctg
gaaacctgcaccaatgaattggaatggagtccgccttatgcgtacagcgccgggaaatcc
atcgccgccgttgagaaatatgtgctggaaaatgccggggcgggaaaactggagattgcg
ctgccgtag
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