Pseudophryne corroboree (corroboree frog): 134900435
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Entry
134900435 CDS
T11513
Symbol
NCBP1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03013
Nucleocytoplasmic transport
pcob03015
mRNA surveillance pathway
pcob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134900435 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
134900435 (NCBP1)
03015 mRNA surveillance pathway
134900435 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcob03019
]
134900435 (NCBP1)
03041 Spliceosome [BR:
pcob03041
]
134900435 (NCBP1)
Messenger RNA biogenesis [BR:
pcob03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
134900435 (NCBP1)
Spliceosome [BR:
pcob03041
]
Common components
Common spliceosomal components
Cap binding complex
134900435 (NCBP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
DUF1690
Importin_rep_6
CCDC39
NOCA1_mid
Motif
Other DBs
NCBI-GeneID:
134900435
NCBI-ProteinID:
XP_063770310
LinkDB
All DBs
Position
1:591095238..591184284
Genome browser
AA seq
789 aa
AA seq
DB search
MSRRRHSYKSDGGQPHKRQKTSESVVIENRLESLICLVGQKNTFSVESNLEGLAGVLEAD
LPNYQSKILKIFCAVARCLPEKMTVYTTLVGLLNARNYNFGGEFVEAMIRQLKEAIKSNS
YTEATYIVRFLSDIVNCHVIAAPSLVAMFESFVAVTQEENVPQVRADWYVFAVLSSLPWV
GKELYEKKDVEMDRIFSQIESYLKKRQKIHLSMLQVWSADKPHPQEEYLDCLWAQIQKMK
KDHWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTGDSIYPMPRVIFRMFDYTDAPEG
PVMPGTHSAERFVIEENLHCIIKSHWRERKTCAAQLLSYAGKNKIPLNYHIVEIIFGELF
QLPVPPHPEVMYTSLLIELCKLQPGSLPQVLAQATEMLYTRLDTMNTTCIDRFINWFSHH
LSNFRFRWNWEDWADCLSQDLDRPKPQFVREVLEKCMRLSYHQRILDIVPSSFSALYPAN
PKCIYKYGDESSSTLIGYAPATTLTSVIKNRAINEDIFNILKDVPNPNQDDDDEGIGFNP
LKIDVFLQSLLNLASKSFSHSFSALAKFHEVLKSLSDSEEGKLHILRVVYEVWKNHPQMI
AVLVDKMIRTQIVDCAAVANWIFSPELSHDFTRLYIWEILHSTIRKMNKHVQKVQKELED
SKQRLARHNKRRDEDDDDDSGREDGPLEEQIERLQEKLESAQSEQKNLFLVIFQRFIMIL
TEHLVRCETGGIDVITPWYKNCVERLQQIFLQHHQIIHQYMVTLENLLFTAELDHHILTV
FQQFCALQA
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgaagaaggcacagctacaagagtgacggagggcagcctcacaagaggcaaaag
acttcagaatccgttgttatagagaaccggttagagtcattgatatgtctggttggacag
aagaatactttttcagttgagagcaatttagaaggattggctggtgttttggaagctgat
ttgccaaactaccaaagcaagatcttgaaaattttctgtgcagttgctcggtgtttgccg
gagaaaatgactgtctacactacattggtgggactactgaatgccaggaactacaatttt
ggaggagaatttgtagaagctatgattcgtcaactcaaagaagcaataaaatctaattca
tacacagaggctacatacattgtccgctttctatctgatattgtgaattgccatgttatc
gcagccccctccttggtagccatgtttgaaagttttgttgccgtcactcaagaagaaaat
gttccccaggttcgtgccgattggtacgtgttcgctgtcctttcctccctgccatgggtt
ggaaaagaactgtatgagaagaaggatgttgagatggatcgtattttttcacaaatcgaa
agttacctcaagaaacgtcaaaagatccatttgtcaatgttgcaagtatggtcagcagac
aagcctcacccacaagaagagtaccttgattgcctgtgggcacagattcaaaagatgaaa
aaggatcattggcaggaaaggcatatattgcgcccatatcttgcctttgacagcatatta
tgtgaagccctgcagcacaatctaccacctttcacaccaccacctcacacaggtgattcg
atctaccccatgccaagagtcattttcaggatgtttgactacacagacgcaccagagggt
ccagtaatgcctggaactcattctgcagagcgatttgtcatagaggaaaatctccactgt
attattaagtcacattggcgtgagagaaaaacatgtgcggcacagctacttagctacgct
ggaaaaaataagattccattaaactaccacattgttgagatcatctttggtgaattgttt
cagcttcctgtaccaccacatccagaggtcatgtacacatcactattaattgaactttgc
aagctacaaccaggatctttaccacaagtgcttgcccaagccactgagatgctttatact
cgcttagacaccatgaacacaacttgcattgacaggttcataaactggttttctcaccac
ctgagtaacttcagattccgatggaattgggaagattgggcagattgtctttcacaagat
ctagaccgacctaagccccagtttgttcgagaagttttagaaaagtgcatgagactttct
taccatcagcgcatattggatattgtgccttcatccttttctgcattgtacccagcaaat
ccgaaatgcatttacaagtatggggatgagagtagcagtactctaattggctatgctcct
gctactactttgaccagcgtcatcaaaaacagggccatcaatgaagatatctttaatatt
ttaaaagacgtaccaaatcctaatcaagatgatgatgatgaaggaattggcttcaatcca
ctgaagattgatgtttttttacagtccctgttaaatttggcttctaaatcatttagccat
tcatttagtgcgcttgcgaagtttcatgaagtcttgaaatcactgtctgatagtgaagaa
ggaaagttgcatattctaagagttgtttacgaagtctggaaaaatcatccccagatgatt
gcagtgctggtggataagatgatacgaacacaaattgttgattgtgctgctgtagccaac
tggattttctctcctgagttatcacacgacttcactaggttatacatttgggaaattttg
cattccaccattagaaaaatgaacaaacatgtacagaaagtacagaaagaattggaggac
agtaaacaacggcttgccaggcataacaaacgtagagatgaagatgacgatgatgacagt
gggagggaggacgggcctttggaggaacagattgaacgtttacaagagaaactggagtct
gcacaaagtgaacaaaagaatctcttccttgttattttccagcgcttcattatgatcctc
acagagcacttagtgcgctgtgaaacaggaggtattgatgtgataactccgtggtataag
aactgcgtagagcgacttcagcaaatctttttacagcatcatcagataatccaccagtac
atggtgaccttggagaacctcttgttcacagcagaacttgaccatcacatcctgactgtc
ttccagcagttctgtgcactgcaggcttga
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