Pseudophryne corroboree (corroboree frog): 134908798
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Entry
134908798 CDS
T11513
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134908798 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcob04121
]
134908798 (TRIM54)
Ubiquitin system [BR:
pcob04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
134908798 (TRIM54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
TRIM_CC
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
CoiA_N
Sina_RING
DUF6414
CYP38_PsbQ-like
Zn_ribbon_FGT1_2
MRP-S23
GldM_1st
Motif
Other DBs
NCBI-GeneID:
134908798
NCBI-ProteinID:
XP_063770991
LinkDB
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Position
4:complement(4323473..4562462)
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AA seq
378 aa
AA seq
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MNFAVGFKSLGGDTQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQASNP
LWQSRGSSTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLNTKS
EQHLMCEEHEEEKINIYCLSCETPTCSMCKVFGAHKDCEVAPLSSVYKRQKSDLSDGIAM
LVAGNDRIQAIITQMEEICKSVEDNSRRQKQHVSQRFDSLYNILEERKKELLQIITKQQE
DKLQYVRGLIRKHGDHLEVTSKLVESAIQSMDEPQMAAFLQHAKELNTKITDMSKVSTID
RPDPGYENMDHLYVNVDYVSEMLRTIDFQSGAQGEEEEDIFDTEETEVALEEERPESTND
SGSRQKAATPQHGDYGGV
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgctgtgggatttaagtctttggggggggatacgcaaaccatggacaacctg
gagaagcagctgatctgccccatctgcctggagatgttcaccaagcccgtggtgatcctg
ccgtgccaacacaacctgtgccgcaagtgtgccaacgacatattccaggcctcaaatccc
ctgtggcagtcccgtggttccagcaccgtctcctctggggggcgcttccgctgcccgtcg
tgtcgccatgaggtggtcctggatagacacggggtgtacgggctgcagaggaacctgctg
gtggagaatatcatagacatctataagcaagagtcctccaggcccctgaacaccaaatca
gagcagcatttaatgtgtgaggaacacgaggaagagaaaatcaatatttactgcctgagc
tgcgagacccccacctgctccatgtgtaaggtgttcggggcccacaaggactgtgaggtg
gctccgctctccagtgtctacaagagacagaagagtgacctcagcgatggcattgcaatg
ctagtggctggtaatgatcggatccaggccattatcacccagatggaggagatctgtaag
agcgtggaggataacagccgacggcagaagcagcacgtcagccagagatttgactccttg
tataacattttggaggagcgtaagaaggagttattacagattatcacaaaacagcaggag
gataagctgcagtatgtgagaggactgatccgcaagcatggagaccacctggaggtcaca
tcaaaactagtggaatcagccatccagtccatggacgagcctcagatggcggcattcctg
cagcatgcaaaggagctgaacacgaagatcacagacatgtccaaagtttctacgatagac
cggccagaccctggctatgaaaatatggaccacctttatgtgaatgtggactatgtgtcc
gagatgctgaggacgattgacttccagtcaggtgctcagggtgaagaagaggaagatata
tttgatacagaggaaacagaggtagcattggaggaagagagaccagaatctacaaatgat
tccggctccagacagaaggcggcgacccctcaacatggcgattatgggggggtttag
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