Pseudophryne corroboree (corroboree frog): 134936559
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Entry
134936559 CDS
T11513
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134936559 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcob03019
]
134936559 (XAB2)
03041 Spliceosome [BR:
pcob03041
]
134936559 (XAB2)
Messenger RNA biogenesis [BR:
pcob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134936559 (XAB2)
Spliceosome [BR:
pcob03041
]
Complex B
Other components
Prp19-related factors
134936559 (XAB2)
Complex C
134936559 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_19
TPR_8
TPR_15
ARM_TT21
RPN7
ARM_TT21_C
Tcf25
TPR_4
TPR_1
Motif
Other DBs
NCBI-GeneID:
134936559
NCBI-ProteinID:
XP_063787705
LinkDB
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Position
6:108191249..108233107
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AA seq
838 aa
AA seq
DB search
MPEKEIAIEEDDLQYEEEILRNPYSVKCWMRYIECKLTGPVHALNLVYERALKELPGSYK
LWYAYLKQRRKQVKRRCLTDPAFEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCKISRT
RRTFDRALRALPITQHYRIWPLYLRFVRSHSVPETAVRVYRRYLKLSPENAEEYIEYLRS
VDRLDEAASRLAAIVNQDDFVSKEGKSNYQLWQELCTLLSHNPNSVHSLDSAAIIRGGLT
RFTDQRGKLWCALAEYHARSGHFEKARDVYEEAIQTVTTVRDFTQVFDNYAQFEENVIAA
KMETVSEMGKEKDDDLDLELRLARFEQLMERRPLLLNGVLLRQNPHNIHEWHKRVQLYQD
KPREIINTYTEAVQTVDPAKATGKPHSLWVSFAKFYEDNGQIEDARAILQRATLVKYTHV
DDLALVWCQFGEMELRHENYDEALAILRKATAVPARKAEYFDASEPVQNRLYKSLRVWSM
LADLEESLGTFKSTKAVYDRIIDLHIATPQIIINYALFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQALDGCPRKFAKNIFLLYAKLEEEHGLA
RHAMALYERATQAVEPGEQYEMFNIYIKRAAEIYGVTHTRSIYERAIELLSDEQSREMCV
RFADMECKLGEIDRARAVYSYCSQICDPRLTSGFWQTWRDFEVRHGNEDTLREMLRVKRS
VQAKYNTQGTFLVSQRLRAEGGAASDDAREPADEMQALEQRAAVVAAEAEKDKPQMKEKI
LFVRSDASRTELAELTLQANPDEINIGDEDSEEEMEPDEVQLEQKSIPASVFSGLGDD
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccggagaaagagatcgcgatcgaggaagatgacttgcagtatgaggaggagatcctg
cgaaacccatactctgtcaagtgctggatgcgctatattgaatgcaagctcaccggcccg
gtgcacgcacttaacctagtctatgaaagagcactaaaggagttgccaggaagctacaag
ctgtggtatgcctacctaaagcagcgcaggaagcaggtgaagagaaggtgtctcaccgat
ccggccttcgaggaggtgaataactgtcatgagagagcccttgtattcatgcacaagatg
ccccgaatttggctggactactgccagttccttatggatcagtgtaaaatatcccgcacc
aggagaacctttgatcgggctcttcgggcccttcccatcacacagcactatcgcatctgg
cctctttacttgcgctttgtccgttcacactctgtgccagagaccgccgtccgggtctac
aggagatacctgaaactgtcaccagaaaatgcagaggagtatatagaatatctgcgctct
gtggacaggttagatgaggcggcctccagactcgcagccattgtaaaccaggatgatttc
gtgtccaaggaggggaaatctaactatcagctctggcaggagctgtgcacactcctctcc
cacaaccctaattctgtccactccctggactcggcagccattatacgagggggcctgacc
cgctttacagaccagaggggcaagctgtggtgtgcgctggccgagtatcatgcccgcagt
ggacattttgaaaaggcacgggatgtctacgaggaggccattcagacagtcaccactgta
cgtgatttcacgcaagtatttgacaactacgctcagtttgaagagaacgttattgctgcc
aaaatggagacagtcagtgagatggggaaagagaaggacgatgacctagatctagagctg
cgattggctcgctttgagcagctgatggagcggagacctctcttacttaatggcgtgtta
ctgcgacagaacccacacaatatccatgagtggcacaagagggtccagttgtatcaagac
aagccgcgtgagatcattaacacctacacagaggccgtccagactgtggacccagcaaag
gcaactgggaaaccgcactcactttgggtctccttcgctaagttctatgaggacaacggc
caaatagaggatgcccgggcgatcctgcagagggcaacgctagtgaagtatacccacgtg
gatgacctggccttggtctggtgccagtttggagagatggagctgagacacgagaactat
gatgaggcactggctatattgaggaaagccacggccgttcctgcccggaaggcagaatat
tttgatgcgtcagagcctgtccagaacaggctatacaagtccctgcgagtgtggtccatg
ctggctgatctggaggaaagtttaggcactttcaagtccactaaggctgtatacgatcgt
attattgatcttcatatagccaccccgcagatcatcatcaattacgccctctttctggag
gaacacaactactttgaagaaagttttaaggcctacgagcgtgggatagctctgttccgc
tggcccaatgtgtatgatatctggagcacctacctatccaagttcattgctcgctatgga
ggaaagaagctggagagagctcgcgatctctttgagcaggctctggacggatgcccccga
aagtttgcaaaaaatatctttctcctgtatgctaagctggaggaggagcacggcctggcc
cggcatgctatggctttgtatgagcgagcgacgcaggcggtggaaccgggggagcagtac
gaaatgtttaacatttacatcaagcgagctgctgagatttatggggtcacacacacccgc
agcatttatgagcgcgctatcgagctcttgtcagacgagcagtcccgggagatgtgtgta
cggtttgcggacatggagtgtaagctgggtgagattgatcgggcccgagctgtgtactcc
tactgttctcagatatgtgatccgcggctgacgtctgggttctggcagacgtggagagac
tttgaggtgcggcacggtaacgaggacacactacgggagatgttacgtgtgaagcggagt
gtacaggccaagtacaacacacagggaacgttccttgtatcgcagagactgagagcagag
ggcggagctgccagtgatgatgccagagaaccagctgacgagatgcaggcgctggagcag
agagcagccgtggtggcagcggaggcggagaaggataaacctcagatgaaggagaagatc
ctctttgtccggtctgatgcttcccgtacagagttagcagagctgacgcttcaagcgaac
ccagatgagattaacataggcgatgaggattcagaagaagagatggaacccgacgaagtt
cagctggaacagaaatcgatccctgcatctgtcttctccggccttggtgatgactga
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