Pseudophryne corroboree (corroboree frog): 134936774
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Entry
134936774 CDS
T11513
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134936774 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcob03041
]
134936774 (SNRNP200)
Enzymes [BR:
pcob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134936774 (SNRNP200)
Spliceosome [BR:
pcob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134936774 (SNRNP200)
Complex C
U5 SnRNP specific factors
134936774 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
134936774
NCBI-ProteinID:
XP_063788088
LinkDB
All DBs
Position
6:149917333..150040006
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLDGTRMGDKAQKTK
PQMQEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKLRDKERRREVDQLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEVGDEDIYGEVRDEASDDDMDGDEAVVRGTL
SANLVTSGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTAGDDR
ECENQLVLLLGFNTFDFIKILRQHRMMILYCTLLARSQSESEKERIMGKMEADSELSKYL
YQLQETEKEDLIREERTRRERVRQSRVDTDLESMEMEQGGESFTPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGADEQLVPVEKLPKYAQAGFDGFKT
LNRIQSKLYKAALDSDENLLLCAPTGAGKTNVALMCMLREIGKHINVDGTINVDNFKIIY
IAPMRSLVQEMVGSFSKRLSTYGINVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEVHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTSRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAEVVLGNVQTAKDAVNWLGYTYLYIRMLRSPNLYGISHDDLKSDPLLEQRRLDLIHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDSVQTYNQLLKPTLSEIEMFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEVVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLHLSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFMDWFEKFQDRLYKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVSLFVVDETHLIGGGNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHSIVKHSPKKPII
VFVPSRKQTRLTAIDILTTCASDVQRQRFLHCTEKDLAPYLDKLSDGTLKETLLNGVGYL
HEGLSSLERRIVEQLFDSGAVQVIVASRSLCWGLNIAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGYANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYEGIPI
RHREDNLLRQLAQKVPHKLTNPRFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTIEHIKRCTDKGVE
SVFDIMEMEDEDRTELLQLSDGQMADVARFCNRYPNIELSYEVADKDSIRSGGAVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtaacagcccgtagtctgcagtacgagtacaaggcgaactctaatcttgta
cttcaagccgatcgctctctgatagaccggacccgccgagatgagcccacaggcgaggtg
ctgtcactggtggggaaactggatgggacccgtatgggggacaaggctcagaaaaccaag
cctcagatgcaggaggagaggcgtgctaagaggcgaaagagagatgaagacagacatgac
ataaacaagatgaaggggttcaccctcttgtcagaaggcattgatgaaatggtggggatc
atatacaaacccaaaacaaaggagactcgcgagacctacgaggttctgcttagcttcata
caagctgccctgggggaccagccaagagatatcctgtgtggtgcagctgatgaggttctg
gcggtgttaaagaatgataaattgcgagataaggagagaagaagggaagttgatcagctc
ttgggacagaccgatgatacgcgataccatgtactggtgaacctgggtaaaaaaatcact
gattacggaggggacaaggaaattcaaaatatggatgataatatagatgagacttatgga
gtcaacgtgcagtttgaatctgatgaagaggtgggtgatgaagacatatacggagaggtg
agagacgaggcctctgatgatgacatggatggagatgaagctgttgtgcgtggcacactc
tctgccaatctggtgacgtctggagagctcatgagttctaagaagaaagatcttcaccca
cgagacatcgatgctttctggctgcaaagacagcttagcagattttatgatgatgctatt
gtgtcgcagaagaaggctgatgaggttctcgaaatcttaaagactgcaggcgatgaccgt
gaatgtgaaaaccagttggtgctgctgctgggattcaacacgttcgacttcattaaaata
ctaagacagcatcgtatgatgattctgtactgtaccctcttggcccgttctcagagcgag
tcagaaaaagagagaattatgggtaaaatggaggcagactctgagctgtccaagtatctg
taccagctgcaggaaaccgaaaaggaggatctgattcgggaggagcgcacgcgtagagag
cgggttagacagtcccgtgtggacacagacttggaaagtatggagatggagcagggaggg
gagtctttcactccccgccaagtcttggatttggaagacttggtctttgcgcaaggtagt
cacttcatggccaacaaacgatgccagctgccggatggatcattcaggcgccagaggaaa
ggctatgaggaggttcacgtacctgcactaaagccaaaaccttttggtgcagacgagcaa
ctcgtgccagtggagaaacttccaaaatatgcccaggctggatttgatgggtttaaaact
ttgaacaggatacagagtaaactctataaagctgcactagactctgatgagaatctgctt
ctctgtgcccctactggtgctggcaagaccaatgtagctctcatgtgcatgttgcgtgaa
attgggaaacacatcaacgtggatggcaccatcaatgtggacaacttcaaaatcatttac
attgcacccatgcgatccctggtacaggaaatggtggggagtttcagcaagcgtttgtct
acatatggcatcaatgtagcggagctgactggcgatcaccagctatgcaaggaggagata
aatgccacccaaattattgtctgtacaccagagaagtgggacatcatcactcgtaaagga
ggagagagaacttacactcagcttgttcgtctaataattctggatgaagtccaccttctc
catgatgaccgaggtcccgtattggagtctttagttgctagagctatccggaacattgaa
atgactcaagaagatgtgaggctggtgggtctcagtgccactttgcccaattatgaggat
gtagccaccttccttcgcgtggaccctgccaaaggacttttctattttgataacagtttc
cgaccggtcccactggagcagacatatgttgggatcacagagaagaaggcaataaaacgt
ttccagatcatgaacgagattgtgtatgagaagattatggagcatgctgggaaaaaccag
gtgctggtttttgtgcattccaggaaagaaactggcaaaacttcccgtgccatcagagac
atgtgcctggaaaaggacacattgggtctattcctgcgagagggatctgcctctactgag
gtgctgcgtacagaggctgagcagtgcaagaacctggaactaaaagaccttctgccatat
ggatttgccattcatcatgcaggcatgagtcgtgtggacagaactctggtggaggatctc
tttgctgacaaacacattcaggttctggtctccacagctacattggcctggggtgtgaat
ctcccagctcatacagttatcatcaaaggaactcaggtttacagcccagaaaagggcaga
tggacagagttgggagccctggatatcctgcagatgctgggtagagccgggcgtcctcag
tatgacacaaaaggtgaaggcatactcatcacatcacatggtgaacttcagtattatctc
tccctgctcaaccagcagctgcccattgagagtcagatggtggctaagcttccagacatg
ctgaatgcagaggtggttctgggaaatgtgcagactgcaaaggatgctgtgaactggctg
ggctacacatacctatatatacgtatgctgcgctcacccaacctctatggaatttctcac
gatgacctcaaatctgaccctttgctggagcagagacgtctggatttgatccacacagca
gctcttatgttggacaagaacaatttggtgaaatatgataagaagactggtaatttccag
gtgactgaattgggtcgtattgccagccactattatatcaccaatgactctgtacagacc
tacaaccaacttctaaagccaacgctcagtgaaatagaaatgttccgggtgttctccttg
tcttcagagttcaagaacatcacagtccgagaggaagagaaactggaactgcagaagcta
ctggagagagtaccgattcctgtgaaggagagtatagaggagccaagtgctaaaatcaat
gtcttactccaagcattcatctcacagctgaaattggaagggtttgccttgatggctgac
atggtgtatgtcacgcagtctgcggggcgcctgatgcgggcgatatttgaagttgttctg
aaccgtggatgggcacagctcacagacaagactctgaacctctgcaagatgatagataag
aggatgtggcagtcaatgtgtccgctacgccagtttaagaaactcccagaggaagtggtg
aagaagattgaaaagaaaaactttccatttgagcgtctctatgacttaaatcataatgag
ataggtgagctgatccgcatgcccaagatggggaaaaccatccataaatatgtgcactta
ttccctaaactgcacctgtctgtgcacttgcagcccatcactcgctccacattaaaagtg
gaactgaccatcacacctgacttccagtgggatgagaaggttcatggctcttctgaggct
ttctggatccttgtggaagatgtggacagtgaagtgattttgcaccatgaatatttcctt
ctcaaagccaaatatgctcaggatgagcatctggtcacgttctttgtgccggtgtttgag
ccccttcccccacagtacttcattcgggtggtctctgaccgctggctatcctgcgagaca
cagctacccgtctccttccgccacctaatcctgcctgagaaataccccccacccaccgaa
cttctggatctgcagccactgcctgtctctgctctaagaaacagcgcatttgagagcctc
taccaggacaagtttcctttcttcaaccctatccagacccaagtcttcaatacagtgtat
aacagtgatgacaacgtatttgttggggctcccaccggcagtgggaagactatttgtgca
gagtttgcaattcttcgtatgctcctgcagaactcagaggggcgctgtgtttatataact
cccatggaggctctagctgaacaggtatttatggactggtttgagaagttccaggacagg
ttgtataagaaggttgtcctgctgactggtgaaaccagcactgacctgaaactgctggga
aaagggaatattatcatcagcacaccagagaagtgggacatcttgtcccgacgttggaag
cagcgtaaaaatgtgcagaacgttagcttgttcgtcgtggatgagactcatctcattggt
ggaggcaacgggcctgtgctggaagtcatctgctcccgtatgcgctacatatcctcccag
atcgagaggcctatccgcattgtggccctcagctcctctctctccaatgccaaagatgtg
gcacattggttagggtgcagtgccacgtcaacgtttaacttccatcccaatgtgagacca
gtacccctggagctacacatacagggctttaacatcagtcacacacaaaccagacttctt
tccatggccaagccagtttaccactccattgtcaagcattcgcccaagaagcccattata
gtctttgtcccatcacggaagcagacccggctcacagcgattgatatactcaccacatgc
gcctctgacgtacagcgacaaaggtttctacactgcacagaaaaggatctggcgccatac
ctggataagctcagcgacggcactttgaaagagacactgctgaatggcgtaggctatctg
cacgaggggctctcctccttggagcgacgcatcgttgaacaactcttcgactctggtgca
gtgcaggtgattgtagcttctcgcagtctttgttggggtcttaacattgctgctcacctg
gtcatcatcatggacactcagtactacaatggaaagattcacgcctatgtggattatccc
atctatgacgttctccagatggtgggatatgcaaaccgacctttgcaggatgacgaaggg
cggtgcgtcattatgtgtcaaggatcaaagaaggatttctttaaaaagttcctgtacgag
cctctcccagtggaatctcacctggatcactgcttacacgaccatttcaatgctgagatt
gtcaccaaaaccatagagaacaaacaggatgcagtggactacctgacctggacgttcctg
tacaggcgtatgacacagaatcccaactactacaacttgcagggtgtgtctcacagacat
ctctcagaccacttgtcggaactggtagaacagacgcttagtgacttggaacagtctaag
tgtatcagcgttgaagatgaaatggatgttgcgcctcttaatctgggcatgatagcggct
tattattacatcaactacaccacaatagaacttttcagcatgtccctgaatgctaaaacc
aaagtacgtggattgattgaaattatctccaatgctgcggagtatgagggcatacctatc
cgccaccgcgaggacaacctcttgcgtcagctggcgcagaaagtcccccataaacttacc
aaccccagattcaatgaccctcatgtcaagaccaacctgctgcttcaggctcatctctcc
cgcatgcagctgagtgctgagcttcagtcagatacagaggagatccttagcaaggcaatc
cgcctcatccaggcgtgtgtggatgtgctctccagtaatggctggctcagcccagccctc
gctgctatggaactggcacaaatggtcacccaagccatgtggtccaaggactcctatctc
aaacagttgccgcactttaccattgagcacatcaagcgatgcacagacaagggagtggaa
agtgtattcgatattatggagatggaggatgaggatcgtacagaactcctgcagctctcc
gatggccagatggcagatgtagccaggttctgtaaccggtatcccaacattgaactgtcc
tatgaggtggcagacaaggactccattaggagtggcggagctgttgtggtgcttgtgcag
ctggaacgagaggaggaagttacaggacccgtcatcgctcccctcttcccgcagaaacgt
gaagaaggctggtgggttgtcattggagatgctaaatcaaatagtctgatctccatcaag
aggctgaccctacagcagaaagccaaggttaagttggatttcgtagctccagccacaggg
gcgcacaattacaccctttattttatgagcgacgcttacatgggttgtgatcaggagtac
aaattcagtgtggatgtaaaggaggccgaaagcgacagtgattctgattag
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integrated database retrieval system
