Pseudophryne corroboree (corroboree frog): 134949504
Help
Entry
134949504 CDS
T11513
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03013
Nucleocytoplasmic transport
pcob03015
mRNA surveillance pathway
pcob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134949504 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
134949504 (DDX39B)
03015 mRNA surveillance pathway
134949504 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcob03019
]
134949504 (DDX39B)
03041 Spliceosome [BR:
pcob03041
]
134949504 (DDX39B)
Enzymes [BR:
pcob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134949504 (DDX39B)
Messenger RNA biogenesis [BR:
pcob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134949504 (DDX39B)
Spliceosome [BR:
pcob03041
]
Complex C
Other components
EJC/TREX
134949504 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134949504 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134949504
NCBI-ProteinID:
XP_063794188
LinkDB
All DBs
Position
8:complement(442027995..442058228)
Genome browser
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQAGGDATDIAPKKEIKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEMLKKSCPHIVVGTPGRILALA
RNKILNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMQQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacagatgtggacaacgagcttttggactacgaagatgatgaagtcgacaac
caggccgggggagatgcaacggacatcgcccccaagaaggaaataaagggatcgtacgtg
tccattcacagctccggcttcagagattttcttcttaaacccgagttgcttcgcgccatc
gtagactgtggctttgagcatccatcagaagtgcaacacgagtgtatcccgcaagccatt
ctgggcatggatatcctgtgtcaggcgaagtccggtatggggaaaactgccgtgtttgtc
ttggccacattgcagcagctggagcctattacaggacaggtctccgtgttagtcatgtgt
cacactagagaactggctttccagatcagcaaagagtacgagcgattctcaaaatacatg
ccgtctgttaaggtggcggtattttttggcggccttgccattaagaaggacgaggagatg
ttgaagaagagctgcccccacattgtggtggggacccccggccgtattctggcgttggca
agaaacaagattctaaacctgaagcacatcaaacacttcatcttggacgaatgtgacaag
atgctagagcagctagacatgcgcagagatgttcaggaaattttccgtatgacccctcac
gagaagcaggtcatgatgttcagtgctaccctgagcaaggagatccgcccggtctgcagg
aagttcatgcaagatccgatggaaatcttcgtggatgatgagaccaagctgaccctccat
ggcctacagcaatattacgtcaaactcaaggacaatgagaaaaaccgcaaactttttgac
ctcctggacctgttggaattcaaccaggtggtcattttcgtcaagtccgttcagcggtgc
atcgccctggctcagctgttggtggagcagaacttcccggctattgctattcaccgtggg
atgcagcaggaggagaggctctcccggtatcagcaatttaaagactttcagcggagaatc
ctggttgccactaatctgtttggtcgcgggatggacattgagagagtgaacattgccttc
aattatgacatgccggaggactctgatacttatttgcacagggtggcacgtgccggcagg
tttggcaccaagggtctagccatcacattcgtctccgatgagggcgatgcaaaaatccta
aacgaggttcaagatcgttttgaggtcaacatcagcgagctgcctgacgagattgatatc
tcttcctatattgaacagacgcgatga
DBGET
integrated database retrieval system
