Pseudophryne corroboree (corroboree frog): 134949512
Help
Entry
134949512 CDS
T11513
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134949512 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcob03019
]
134949512 (SKIC2)
Enzymes [BR:
pcob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134949512 (SKIC2)
Messenger RNA biogenesis [BR:
pcob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134949512 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
134949512 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
134949512
NCBI-ProteinID:
XP_063794195
LinkDB
All DBs
Position
8:complement(443184423..443258015)
Genome browser
AA seq
1246 aa
AA seq
DB search
MNKLDLSAVDPLDLPFSILEVGIAGRLELITNPANTNGSTLPISTIPNGLPPYDVDLSVE
VIQKYLADPEWLSIHDFDRSQRSWPRVKDVASLYHMDISAPQTELNMERNSATGELRGIG
EVSVNHASLSAQNSLSLRRPPGPPSQSVRGSTSNFPFWPGGMDEPTLEQIKAMNDEEEAL
DFGTDLLTVPPGWKHGMNFKQTDALQTPGFLPLASMLGTLEDFTLGDSSEDEEEVKGKTK
DKGATPEALPRTNSLEELGVETSSAPALEASASPPPESSQEQWAVPLDSNSPVDDFYKRI
PELAFKHPFELDPFQKKAIQCLEAGSSVFIAAHTSAGKTVVAEYAIALSLKHMTRTIYTS
PIKALSNQKFRDFKITFGDVGLITGDVQLYTGASCLIMTTEILRSMLYNGSDVIRDLEWV
IFDEVHYINDVERGVVWEEVLIMLPDHVNIILLSATVPNTVEFADWIGRIKKRKLYVIST
MRRPVPLEHFLYTGNSQKTQNQFFLLQDASGAFQTKGYYAAVEAKKERSSKYSQTFGAKH
PHGGGAGHDKGTWLSLIHSLRQRDALPVVVFTFSRSRCEQNASALTTVDLCTAAERSEVQ
TYYTKCLSRLRGGDRQLPQVLHMLDLLKRGIGIHHSGILPILKEVVEMLFSRGLVKILFA
TETFAMGVNMPARTVVFDSIRKHDGSNFRDLTPGEYIQMAGRAGRRGLDTTGMVIILCKS
DVPEMSDLHRMMLGKPTQLQSQFRLTYSMILNLLRVEALRVEDMMKRSFAEARTQKDSKS
HEQRIKVLTKTLGEMGDIECSGILADLQDYFVTVQELIRTRQTLQKRVVESINGMKCLSV
GRIIIISTEYHHWVPGVILQVSSDAANRIYTTLVLCEKKRDGVAAVEREEKESRVPSPDD
LLMGKVFRPEGPCGCTLLKLRSADILIITGKTLRVQADKVLDDVTRSQTPRFRNDPPGPA
MSGVTQELSRLADLPPGSLTSLCPINDLQLKEVEVVEAVTRIRRLEGALTEFSCPKSPRF
TSQYLRLEQRSQVLDELDRLRFLTSDQSLSLLPEYQQRIDVLCTLQYIDGGGAVQLKGRV
ACEVCSHELLVTELVLDGALSPLAPEEIAALLSCLVFQHKTQCEPRLTDTLKQGVKKVRE
LAERLALVQRECGLRESVEDFVAQYKFGLTEVVYEWARGMPFSEIMTLTDIQEGLIVRCV
QRLDEACRDVRSAARLVGDATLCAKMDAASQLIKRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaataaactagatctctcggctgtagacccgctggatctcccgttctctatcctggaa
gttggcatcgctgggagattagaactgatcactaatcctgccaacactaatggatctact
ttaccgatatctacgattcctaatggcttaccaccatatgatgtggatctgtccgttgaa
gtgatccagaagtatcttgctgaccctgaatggctttctatccatgactttgatagaagc
cagaggtcctggcctcgggtcaaggatgtggcctctctttaccacatggacatcagtgcc
ccgcagactgagctcaacatggagcggaactcggccactggagaactgcgcggcatcggc
gaggtctctgtaaatcatgccagtctctctgctcagaactccctctccctccggcgccct
ccaggacctccgtcacagtctgtcaggggtagtacctccaacttccctttttggcctggt
ggaatggatgagcccactcttgaacagataaaagccatgaatgatgaagaggaagccctg
gacttcggcacagatcttttaactgttcctcccggatggaaacacggaatgaatttcaag
cagacagatgccttgcagacccccgggtttctgcctcttgccagtatgctggggactctg
gaagatttcacattgggagactccagtgaggatgaggaggaagtgaaaggaaaaacaaag
gataaaggagcaacgccggaggctctgcctaggacaaacagcctggaagagcttggtgtg
gagacgtcatctgctcctgcactggaagcgtcagcctcccctccaccagaatcctcccag
gagcagtgggccgttcccctggacagtaactcccccgtggatgatttctataagcgtatt
ccggagctggcctttaagcatccatttgaactggacccctttcagaagaaggctattcag
tgccttgaagctggttcctctgtctttattgctgctcacacgtctgctgggaagactgtg
gtcgccgagtatgctatagcgttgtctctcaagcacatgaccaggactatatacacttcc
cccatcaaggctttgtccaatcagaagtttagagatttcaaaatcacgtttggagatgtg
gggctaattacaggagatgtccagctttataccggggcatcgtgtctcatcatgaccaca
gagatcctaaggtccatgttgtataacggttctgatgtaattcgagacctggaatgggtg
atctttgatgaggttcattatattaacgatgtggagcgtggcgttgtatgggaggaggtt
cttataatgctaccagaccacgtgaacatcattctactgagcgccacagttcccaacacc
gtggagttcgcagactggatcgggagaattaagaagaggaaactgtacgtgatcagcacc
atgaggaggccggtcccattggagcatttcctgtacacgggcaacagtcagaaaacgcag
aatcagtttttcctgctgcaagatgcatctggagctttccagacaaaaggatactatgct
gcagttgaagcaaagaaggagcgatcatctaagtactcacaaacatttggggcaaaacac
cctcatggaggcggagccgggcatgacaagggcacatggctctctctgattcactctctc
cggcagcgggacgccctccctgtagtggttttcactttctcccgttcccggtgtgagcag
aacgcatccgctctgaccaccgtagacttgtgcacagcagcagaacggagtgaagtccag
acttactacaccaagtgcctgagccgcctgcgcgggggcgatcggcagcttccacaggtg
ttacacatgctggacctgctgaagagagggattgggattcatcacagcggcatcctgcct
atcttgaaggaagtggtggagatgttattcagccgtggcttagtcaagatcctgttcgcc
accgagacttttgctatgggggttaatatgccggctcgcactgttgtattcgactccatc
agaaaacacgacggctcgaacttcagagacctgacaccaggggaatatatacagatggct
ggtcgcgctgggcgccgaggactggacactaccggcatggttataatattgtgtaaatcg
gacgtgccggaaatgagcgatctgcacaggatgatgctggggaagcccactcagctgcag
tctcagttccgtctgacgtattccatgatcctgaatctcctccgcgttgaggctctgaga
gtagaagacatgatgaagaggagttttgcagaagccaggacgcaaaaagacagcaagagc
catgagcaacgtattaaggttctcaccaagacactgggagagatgggagatattgaatgc
tccgggatcctggcagacctccaggactactttgtcaccgtacaggaactgatccgcacc
aggcagaccctgcagaaaagggtggtagagtccatcaatggaatgaaatgtctaagtgtg
ggtcgtatcatcatcatcagcaccgagtatcaccactgggtacccggcgtcatcctacag
gtgtcctcagatgctgccaacaggatctacaccaccttggtgctgtgcgagaagaagcgc
gatggagttgctgcagtggaacgagaggagaaggagagcagggtgcccagccctgatgat
ctgctgatgggcaaagtgttccgaccagagggtccatgtggctgcacccttctcaagctc
cgctccgcagacattctcataataaccgggaagacgctgagagtccaggctgataaagtc
ctggatgatgtcaccaggagccagaccccccgcttcaggaatgaccctcctggtcccgca
atgtctggtgtgacacaggagctctctcgactggcagacctgcccccggggtcactgact
tccctgtgccccattaatgatctccagttgaaggaggtggaagtagtggaggcagttacc
agaatcaggagactggaaggagcactaacggagtttagttgcccaaagagcccccggttt
acctctcagtatctccgtctggagcagagatcacaggtcttggatgagctggatcgcctc
cgcttcctcacttctgaccagtcgttgagcctcttgcctgaataccagcagagaatcgat
gtcctgtgcaccctgcagtacatagatggcggtggtgctgttcagctgaagggccgggtg
gcctgtgaggtgtgcagccatgagctgttggttacggagctggtcttggacggggccctg
tctcccctcgcccctgaggagattgcagctctgctctcttgcctggttttccagcataag
acccagtgtgagccccggctcacagacacactaaagcagggtgtgaagaaggtgcgggag
ctggccgagcgcctggcactggtacagcgggagtgtggtctcagggagtctgtggaagac
tttgtggcacagtacaagttcggtctgacggaggtggtatacgagtgggcacgtggcatg
cccttctctgagataatgacactgacggacatccaggaaggcctgattgtgcgctgcgtt
cagcgcctggacgaagcctgcagggatgtgcggtctgccgcccgactggttggagatgcc
acactgtgcgccaagatggacgccgcctcacagcttatcaagagggatatagtcttcgct
gccagcctgtacacgcagtga
DBGET
integrated database retrieval system
