Pseudophryne corroboree (corroboree frog): 134949693
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Entry
134949693 CDS
T11513
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03015
mRNA surveillance pathway
pcob04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134949693 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
134949693 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcob03021
]
134949693 (SYMPK)
03019 Messenger RNA biogenesis [BR:
pcob03019
]
134949693 (SYMPK)
Transcription machinery [BR:
pcob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134949693 (SYMPK)
Messenger RNA biogenesis [BR:
pcob03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
134949693 (SYMPK)
U7-dependent histone pre-mRNA processing factors
134949693 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
HEAT_MROH2B_C
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
134949693
NCBI-ProteinID:
XP_063794520
LinkDB
All DBs
Position
8:489894694..489976135
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AA seq
1197 aa
AA seq
DB search
MAVSMASQFFSQDEGAPDVMSTSEKVVELLNTAALATNDSKITMLKQVQELIINKEPTLL
DNFLDEIIAFQADKSVEVRKFVVNFIEEACKLDNELLIKLIANLHMLLKDENVNVVKKSI
LTMTQLYKVALQWVARSRPPSDHQESCWDLVTEMAADILLLLESDNDGIRTHAVKFVESL
IVTLSPRTPDSEIPKRQEGDISLEQIPGDHPFLKSNYLRDIGKQALKELLKFMAHPAISS
INLTAALGSLASIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLQLLSVLR
HPSSCEYQGPISTLLLDLGTGQGEITRHLPPPRELGRKRPRESGEGGQKKSRTDPPLADD
EDEKDTISHPPIPASAPSALSATDITAEFLQPLLTPESVANLVLISMVYLPDTMPASFQA
TYTPVESAGTDAQIRHLARLMATQMTASGIGPGVEKVKELPVEVVEEESVKPEGLVIKRR
VSSLPTQGQAISVLGSQAKGEKDEDDEAPLAKKRPEPILPVTQIRPAGSGGRKKVFKLKE
VLEPMTEAQIRSLKLAAVQRILQAERSVGGSAAAQMRVKVLARLVTHLDTSLKVEVLSHF
LRDPRARLELALAWLYQEYCEYQSGAGEQGYQECLIGILTGLQERPDQKDGVFTKFVLEA
PLLTDSALDVIRKYCEDEGRSYLGMSTLRDLILTRPARQFQYLHLLLDLSSNEKDKVRQQ
ALLLVKRMYEKESLRQYIEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEDTVKHCL
YLYLALLPQNHKLIHELASVYTEATADIKRTVLRVIETPIRGMGMNSPELLLLVENCPKG
AETLVTRCLHILTDKVPPSPELVKRVRELYQKRLPDVRFLIPVLNGLDKKEVIQALPKLI
KLNPIVVKEVFNRLLGTQHGDVSSSMSPLTPGDLLVALHSIDSSKCDMKSVIKATNLCFS
ARSVYTSEVLAIVLQQLMDTTPLPMLLMRTVIQALGMYPRLGGFIMNILTRLIYKQVWKY
PKVWEGFIKCCQRTKPQSFSVLLQLPPPQLLSVLQTSPDLRDPLLAHVRSFTPNQMAHVP
HAIMVILEAESRTDPDVEEYPQPVEATEPPAQDLIARRLAQEKSLKRQILEEQKGKNTQE
VEEEMDLPILLLEEEEMITKPSGKGSPPGEAENPVTTATHSPPPEEPMEEDPAPKED
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcagcatggcgtctcagtttttctcccaagatgagggggcaccagatgtaatg
tccacctctgagaaggttgtggaattgttgaacacggctgctctcgccacaaatgactcc
aaaattaccatgctgaaacaggttcaggagcttataataaacaaggaaccgaccctgctg
gataactttctggatgaaatcatcgctttccaggcagataaatctgtagaagttcggaaa
tttgttgtcaatttcattgaagaggcatgtaagctggataatgagctcttgattaaatta
attgccaatctccacatgctcctaaaggatgagaatgtcaatgtggtgaaaaagtccatt
ctgaccatgacccagctgtacaaagtggctcttcagtgggtcgcccggtctcgcccaccg
tcagatcatcaggagtcgtgctgggatctggtgactgagatggcggcagacatccttctc
ctgctggagtctgacaatgacgggattcgcacccatgcagtgaagtttgtggagagtttg
attgtcactttatccccccgtactccagacagcgagatccccaagagacaggagggagac
atcagcctggagcaaatccctggagaccacccctttctgaaatccaactatttgcgggac
attgggaaacaggctctgaaagaactgctgaaattcatggcccaccctgcgatctccagc
atcaatctcactgcggccctcggctctttggcatcgatagcccgccagaggccaatgttc
atgtcggaggtcatccaggcctatgaaacgctgcacgccaacctgcccccaactctggct
aaatcccaggtgagcagcgtccgaaaaaacctgaagctgcagctgctgagtgtcctccgg
cacccgtcgtcctgtgaataccaggggcccatcagcacccttctgctggatctggggacc
ggacagggagagattacccgtcacttaccaccacctagggagctgggccgcaaaaggccc
agagaaagtggggaaggaggacagaaaaagagccggactgaccccccgttagctgatgat
gaagatgaaaaggacacgatatcccatcctccgattcccgcgtctgctcccagcgctctg
tctgctacagatatcaccgcagagtttctgcagccgctactcaccccggagagtgtagcc
aacctggttctcatcagtatggtctacctgccggacaccatgccggcctccttccaggcc
acctatactccagtggagtctgctggaaccgatgctcagatccggcatctagcgcgactt
atggccacacagatgaccgcttcaggaattggtccaggtgtggagaaggtgaaggagctt
ccagtcgaggttgtggaggaggaaagtgtgaagccggagggactggtgatcaagcgacgg
gtttcctccctgcccactcaggggcaggccatctctgttttggggtctcaagctaagggt
gaaaaggatgaggacgatgaagcccctcttgccaaaaaacgtcctgagcctatactgccg
gtgacgcagattcggccggctggatccggaggacgcaaaaaggtctttaagctcaaagaa
gtcctggagccgatgacagaagctcagatcagaagcctgaaactggcagcggtgcagaga
atcctacaagcagagcgcagtgtggggggcagcgccgcagcccagatgcgtgtgaaggtt
ctagcacgcctggtaacccatctggatacatccctgaaggttgaagtcttgtcccacttt
ctgagggatccccgggcccggctggagctggcgctggcatggctgtaccaggagtactgc
gagtatcagtcgggggcaggagagcagggctatcaggagtgtctgatcggcattctgact
ggtctacaggagcgtcctgaccagaaagatggggtcttcaccaaatttgtgctggaggct
cccctgctgacagactctgcgctggacgttatccggaaatactgcgaggatgagggtcgc
agttatttggggatgtcgacgttgcgggatctgatcctcactcgtcctgctcggcagttc
cagtatttgcatcttcttctggacctaagctctaatgagaaggacaaggtccgtcagcag
gcgctgctcctcgttaagcggatgtatgaaaaggaaagtctccgtcagtacatagagaaa
tttgcccttaattacctccagctgctggtccaccctaaccccccctcggtgctctttggg
gcagataaggacacagaggtggcggccccctggacggaggacactgtgaaacactgtctg
tacctgtacctggccctgcttccccagaatcacaaactgatccatgagctggcatccgtc
tacaccgaggccaccgcagacatcaagaggactgtccttagagtcatcgagaccccgatc
cgaggcatgggaatgaactccccggagctgctcctgctagtggagaattgtcccaagggt
gcggagacactggtgacgcggtgtctgcacatcttaacggataaagttccaccctcccct
gagctagtgaaacgcgtcagagagctgtaccaaaagcgtctcccagatgtgcgcttcctg
attccggtgctcaatggtctggacaagaaagaggtcattcaggcgttgccgaaactcatc
aagctcaaccctattgttgtgaaagaagtgtttaatcggttgctgggtacacagcacggt
gatgtcagttcttccatgtctcctctcacacctggagaccttctcgtggctctccacagc
attgattccagcaaatgtgacatgaaatctgtcattaaggctacgaacctgtgtttctct
gcgcgctcagtgtacacctctgaggtcctggccatcgttcttcagcagctgatggacacc
accccacttcccatgcttcttatgaggacagtcatccaagctcttggaatgtacccacga
ctaggaggcttcatcatgaacatccttacccgtctcatctacaagcaggtttggaagtac
cccaaggtgtgggagggtttcattaaatgttgccagagaacgaaacctcagtctttcagt
gtcctgctgcagctgcccccgccgcagctcctgtctgttctccagacgtcccctgatctc
cgcgaccccctcttggctcatgtcagaagttttacacctaaccagatggctcatgtccca
cacgctattatggtaattctagaagctgaatccagaactgacccagatgtagaagagtat
ccacagcccgtagaggcaacagaacccccagcacaggacctcatcgcccgacgtctcgcc
caagagaaatccttgaaacgacagattctggaggagcagaaaggaaaaaacacccaagag
gtggaggaggagatggaccttcctattctcttattagaagaggaggagatgatcacgaaa
ccctctgggaaagggtctcctccaggcgaggcggagaacccagtgaccaccgccacacac
tcgccgccccctgaggaacctatggaagaggacccagcgccgaaagaggactag
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integrated database retrieval system
