Pseudophryne corroboree (corroboree frog): 134957656
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Entry
134957656 CDS
T11513
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob04510
Focal adhesion
pcob04512
ECM-receptor interaction
pcob04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134957656 (TNR)
04518 Integrin signaling
134957656 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134957656 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcob00536
]
134957656 (TNR)
Glycosaminoglycan binding proteins [BR:
pcob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134957656 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
EGF_Tenascin
EGF_2
FN3_Tor_3rd
fn3_2
PepSY
Motif
Other DBs
NCBI-GeneID:
134957656
NCBI-ProteinID:
XP_063795768
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All DBs
Position
9:complement(99788069..100553194)
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AA seq
1351 aa
AA seq
DB search
MGSEGGSSALGPLQGGVHLIVLICLLRLSRCHAEVPISQTPGMRIPARGGINLTDRGTGN
KHQPLVFNHVYNFNVPLGFPCTVEQESPEEASWVSQQTENTADAGSQITFTHSIRVPQRL
CQCYTAPLAVQHLLSRIEALEREVLLLQERCNDRGCQDAEATGLTEFAPPCSGHGNFSMD
SCVCSQGWGGENCSEPLCPLGCSGRGTCIEGICVCEPDYTGEWCTDLLCPEECSPHGQCQ
DGQCICQDPYTGIGCTELRCPGDCLGKGRCANGTCVCQDGYAGEDCGRMWCVNACSGRGQ
CQDGVCECEEGYSGQDCSEVAPPVDFSVTALGDHWMDLTWEGTSAVTEYVISYQPAVPGE
WGNQQRLQQRVPGDWSAVTIRELEPGTMYNISVCSVISDITSEPASIAMSTHISPPTGLQ
FKNVTQTSVEVQWEPPVFAIDGWEISFTPKNNEGGLTVQLPSSVTSYNQTGLKPGEEYTI
SIISLKEQARSPPTSGSITTEIDGPSHILVRDVSDTVAFVEWTPARAKLDFIQLQYGPVN
GEGEKTTFRLQPPLSQYSMQVLRPGALYEVSVCGIRGDIRSNPVSATFITELDAPKNLRV
ISRASATLELEWDNSEAEGKGYLVVYSTLAGDQYHELRVPWNTGQITRATLTDLIPGTEY
GIGISAIRDNLQSAPATMNARTDLDSPSDLIVTGSTDKTISLAWTKAQGPVDHYRISFTP
SSGMAAEITVPPENSQYDLTDLDPGTEYTITIIAERGRQQSREITVDAFTGFRPITQLYF
SGITAYSVNVSWTDPSPPADRFILSYTPIGGSEPMELSIDASMRQTHLSDLLPSTEYLVT
LLPVHGTLRAELVEGTVTTGVAPPMDVSVINVTEDSMTVVWRPPPSSFHHYRLSYQSTKG
RMDSVVIANDQTQYTLSNLQPTTEHRISLSSVWGREESERVSITAVTAMDPPFGLRASNV
SDSGAVLQWEPPRADVESYIITLTHHTVSGETILIDGDSQEFQLQSLLPRTHYSVSLAAS
IGPQASRSTSVSFTTYLDPPTNLTATEVTRTSALVSWVPPISAIENYILTYKSTNGTRKE
LIVDAEDSWIRLEGLLESTEYNVTILSVQDGERSSIAHTTFTTGGRVFSHPQDCAQHLLN
GDTQNGVYTLYLNDDQSQSVPVFCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFGNL
EDEFWLGLDTLHQLTSQGRYELRIDMREGQEAVYAYYNKFYVGDPRSMYKLRIGDYNGTS
GDSLTYHQGRPFSTKDRDNDVAVTNCASSYKGAWWYKNCHRTNLNGKYGESRHSQGINWY
HWKGHEFSIPFVEMKMRPYNQRTMKKRSLHL
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtgaaggaggaagcagtgccctaggtcccctacaaggcggagtacacctcatt
gtgctgatttgcttacttaggctgtcaaggtgccatgctgaagtgcccataagccagaca
ccagggatgcgcattcccgccagaggaggcatcaatctaactgaccgtggaactggcaac
aagcaccagcctctggtctttaatcatgtctacaatttcaatgttccattgggatttccc
tgcacagtggagcaagagtctccagaagaagctagctgggtgtctcagcagacagagaat
acagcagatgctgggagccagatcaccttcacacacagcattcgggtaccgcaaaggtta
tgtcagtgctacacagccccacttgcagtgcagcacctcctcagcaggattgaggcactg
gaaagagaggtgttgctgctccaagaacgctgtaatgacagaggatgtcaggacgcagag
gccacaggtctcacagaattcgcacctccctgcagcggacatggaaacttcagtatggac
tcatgtgtgtgcagccagggctggggaggagaaaattgttcggaacctttgtgtcccctg
ggctgctccgggagaggtacctgcatagagggcatctgtgtgtgtgaaccagattacaca
ggcgagtggtgcacagacctgttgtgcccagaagagtgcagcccccacggccaatgtcaa
gatgggcaatgcatctgccaagacccatataccggtatcggctgcacagaactccgctgt
ccaggtgactgcttgggaaaaggacgttgtgccaatgggacctgcgtatgccaagatggt
tatgccggagaggactgcgggcgtatgtggtgtgtgaatgcctgcagtgggcgagggcag
tgccaggatggtgtctgtgagtgcgaggaggggtacagtgggcaggattgttctgaagtt
gccccgccagtggatttcagtgtgacagctttgggcgaccactggatggacctgacatgg
gaaggaacgtctgcagtgacagagtatgtcatctcctaccagcctgcggtgccaggagag
tggggcaatcagcaacgcctacagcagagggtgccaggagactggagcgctgtcaccatc
agggaactagagccgggaacgatgtacaatatcagcgtctgctctgtcattagtgacatc
accagtgagccggccagtattgccatgtctacccatatctccccaccaacaggactgcag
tttaaaaatgtgactcagacctcagtggaggtgcagtgggaacccccagtgtttgctatt
gatggctgggaaattagtttcacccctaagaataatgagggtggcctaaccgtccagctc
cccagcagtgtcacttcttataaccagacggggttgaaaccaggagaagagtacaccatt
agcatcatttcattgaaagagcaagcaaggagccctccaacatcaggcagcataacgacg
gaaattgacggcccatcacacatcctagttcgggacgtgtctgacaccgtagcttttgtg
gagtggactccggcaagagctaagctggacttcatccaacttcagtatggcccagtcaac
ggagaaggggagaagaccaccttccgcctgcagccccctctgagtcagtattccatgcaa
gtcctgcgaccaggagcgctgtatgaggtgtccgtgtgtggcatccgtggggacattcgc
agtaatcctgtcagtgccactttcatcacagagctagacgccccaaaaaatttacgggtg
atctcccgtgcctcagccaccctggaactggagtgggataacagtgaggcagagggtaag
ggttacctggtcgtctacagcacgcttgccggagatcagtaccacgaactcagggtacca
tggaacactggccaaatcacaagagccacacttacagatttgatcccgggaacagaatac
ggaattggaatatcagccatccgagataatcttcagagcgctccggcaacgatgaacgcc
cgtactgacttggacagcccaagcgatctgatagtcactggttccactgacaagaccatc
tccctagcatggacaaaagcccagggtcctgttgaccactaccgcatctctttcacaccg
tcttctggcatggctgccgaaatcacagttccccctgaaaactcacagtatgacctgacg
gaccttgacccaggaacagaatacaccattactatcattgcagaaaggggacggcagcag
agcagagagattaccgtggatgcatttacaggtttccgcccaattacacagctgtatttc
tccggaatcacagcttacagtgtaaacgtttcatggactgacccctctccaccagccgac
aggttcatacttagctatactcccatagggggcagtgaacccatggagctctctatcgat
gcatcaatgcggcaaacacatctctcggacctgctgcccagcacagagtatctggttacc
ctgctacctgtccatgggacactaagagcagaactggtggaaggcacagtaacaaccggg
gtggcacctcctatggatgtatcggtgatcaatgtaacagaggactcaatgacagtggtt
tggagacctccgccttcctcgtttcaccattaccgactttcttaccagtcaactaaaggg
agaatggacagcgtggtgattgctaatgatcagactcagtataccctctccaatttgcag
ccaaccactgagcacaggatcagcctgagcagtgtctggggtcgggaggagagtgagcga
gtcagtataacagcagtgacagccatggatcctccgtttggcctgagggccagtaacgtc
agtgactcgggagctgttctgcaatgggagccgccaagggcagacgtggagagttacata
atcactctgacacaccatacggtctcaggagaaaccattctcattgatggggatagccag
gagtttcagctgcagagccttctcccacgaacccattattcagtctctctggcagccagc
atcgggccccaagccagccggagcaccagtgtcagcttcaccacatatttggatcctccc
acaaacttgacagccactgaggtgaccagaacaagtgctctggtgtcgtgggtgccgcct
atctctgctattgaaaactacattctgacgtacaaatctactaacggcaccagaaaggag
ctgattgtggatgctgaagactcatggatccgcctggagggactgctggagagcactgaa
tacaatgtcaccatactgtcggtacaggatggagagcgaagttccatcgctcacacaacg
ttcactacaggtggaagagtgttctcccacccccaggactgtgcgcagcatttactgaat
ggcgacacgcagaacggagtctataccctctaccttaatgatgaccagagtcagagtgta
ccagtgttctgtgacatgaccactgatggaggaggctggattgtgtttcagagacgtcag
aatggtcttacagattttttccggaagtgggccgactatcgtgtgggttttgggaacctt
gaggatgaattttggctggggctggatacgcttcatcagcttacttctcagggccgttac
gagctgagaattgacatgcgcgaaggacaggaagccgtgtatgcatattataacaagttt
tatgtaggcgatccacggagcatgtacaaactgcgcatcggggactacaacgggacttca
ggggattcccttacttaccaccaggggcgcccattctctaccaaggacagagacaatgat
gttgctgtaacaaactgcgcctcgtcatataaaggagcctggtggtataagaactgtcac
cgcaccaacctgaatggaaaatatggagagtcaaggcacagccagggaataaactggtat
cactggaaaggccatgagttctccattccatttgtggagatgaagatgaggccctacaat
caacgtactatgaagaaacgctccctccatctctga
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