Pseudophryne corroboree (corroboree frog): 134957681
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Entry
134957681 CDS
T11513
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134957681 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcob03019
]
134957681 (SMG7)
Messenger RNA biogenesis [BR:
pcob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134957681 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
134957681 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
134957681
NCBI-ProteinID:
XP_063795824
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All DBs
Position
9:complement(110569322..110679073)
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AA seq
1175 aa
AA seq
DB search
MTDSKPGTAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN
RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVRSSQLGIISNKQMHCGT
VVKPQSSSCAYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS
KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREEVKKRWGVPDFIKAFIKFHG
HLYLTKSLDRLSHLREQLEEQFKNMLFQKAFNSQQLVHITVINLFQLHHLRSFGTEVEQQ
SFSSEEDLCWSQLLALFMSFLGVLCRCRLKTLHCDETTCADPLPAIKVSLDWMKLRPSVF
QETDVEERKYVWPWLISLLNSFHVLEEDLAGANLLPLPEEFELQGFLALRPAFRNLDFSR
GHQAIIGDRETQHRRLRPIRLVSLGKWISESQPRLIQYHTIQGEVSFFTDIPEVMIEDGD
EAEDRSSPLEATQAETQKSEGSPGLKSVLSSGRSPSCETSEKPVVTFKENIKPQEVNREV
PARSYTRTLNAGKEQRDYNKGMNTAVSKKDNNGKRKTEIKKPGADKIQEPAKQSIAVQVK
TPVTEARKTSVTPTSSPSTNTQFIPIHHPGAFPPLPSRPGFPPPAYVIPPPVAFSIGSGY
TFPAGVNVPGSFLQPSSHSAAGSQGPPGKQSHIPYSQQRPSGPGTPNQGAIGNQLPGQTQ
SQAPSNSPTQSSAQTAAQLQLVLAQQQQQSPTKPIQSLGKNPQHHPSLQQYQQVADKSKQ
LWSSPQVSNSLGKLLPPMKQTYFMDGRLPAEPLSMLEQCIQHPVMQQPLEKKMKPFPMDA
YNQNTSEMKMSDFYWGDQTSYNLNDNRALLAQQSVNNQRCKRQPTAYRSGQDSMNRMPFE
EPKRSPLLPPDLLKSLAALEEEEELAFSPPPDLYPALLGPLATLPGRSLFKSLLEKPSEL
ISQPPSFLSLTGFSLSQERFPSNSVFNEVYGKSACGSTKPEACPAIGQQETSLYSLFEGK
PWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHAAQPFSNFGPIGTPDSRDRRGAD
RWKTDKPAMGGFGLDYLSVTTSSENSWRHINNSSSANAWAAQGNPREDSSAALMESLKSI
WSTTMMHPGPSALEQLLMQQKEKQQRGQGSLNPPH
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgacagattccaagcctggcacagcggaggtgtggacatcacgtcaagctctacaggac
ttgtatcagaagatgttggtgacagaccttgagtatgcactggacaagaaggtggaacag
gacctttggaatcacgccttcaagaaccagatcacaacactgcaggggcaggccaaaaac
cgggcaaacccaaatcgtagtgaggtgcaagctaatttgtcactattcttagaggcagct
agtggattctatacacagcttctgcaggagttgtgcactgtgtttaatgtggatttgcca
tgccgtgtgagatcctcccagctggggattatcagcaataagcagatgcactgtgggaca
gtggtgaaaccgcaatccagttcctgtgcctatatttgccagcactgcctggttcacctt
ggggacatcgctcgctataggaatcaaacaagccaggccgaatcctattatagacatgct
gctcaacttgtcccttccaatggtcaaccatataatcagctggctattctcgcctcttca
aagggggatcatctgaccactattttttactactgccgcagcattgctgttaaatttcct
ttcccagcagcctccaccaacctacaaaaggctttatctaaagctttggagagtcgtgag
gaggtgaaaaaacgctggggtgtcccggattttatcaaggccttcattaagttccatgga
cacttgtatttaacaaagagcctggacagactgagccatttgagagaacaactggaggag
cagttcaagaatatgctctttcaaaaagcttttaattcccagcagttggttcacatcaca
gtgataaacctattccagctgcaccatctacgtagttttggcactgaggtggagcagcag
agctttagctcagaagaggacctgtgctggtctcagcttctggctctcttcatgtcgttc
ctgggcgtcctttgcagatgccgcttaaagacccttcactgtgacgaaacaacctgtgcc
gatccccttcctgctatcaaggtgtcgctggactggatgaagctgcgtcccagtgtattc
caggagaccgatgtggaagaaagaaaatatgtgtggccgtggctgatttctctgctaaac
agctttcatgtgctagaggaagacctggctggtgccaacttgttgccgcttccagaggag
ttcgagcttcagggattcctagctctccgaccagctttcagaaacctagatttctctaga
ggtcatcaagccattattggagaccgggagacgcagcaccgtcgcctgcgaccaattcgt
cttgtgtcattaggaaaatggatctctgagagccagcctcggctgattcaatatcatact
atccaaggggaagtgtccttcttcacagatatccccgaagtgatgattgaagatggagat
gaggctgaggacaggtcctctccactggaggccacacaagcagagactcaaaaaagtgaa
gggagccctggtttaaaatctgtactttccagtggacgcagccctagctgtgaaacatct
gagaagccagtggttactttcaaagaaaacattaaaccacaagaggtaaaccgagaagtg
ccagcacggagttataccagaacattgaatgctggtaaggagcagagagattataacaaa
gggatgaatactgcagttagcaagaaggataataacggcaaaaggaagactgaaatcaag
aagcctggtgctgacaaaatccaagaacctgcaaagcagagtattgctgtacaggtgaaa
acaccagtaactgaggcaaggaaaacatcggtgaccccaacatcgagtccaagcaccaac
acccagttcatacctattcaccatcctggcgctttcccacctctgcctagccggccaggt
tttccccctcctgcctatgtcatcccacctcccgtagcattctccatcggctctggttat
acttttcctgctggtgtcaatgttccaggatcttttttgcagccctcatctcattcagca
gctggaagtcagggccctcctgggaaacagtcccacattccttatagtcagcagcgtccc
tctggcccagggacacctaaccagggtgctattggcaaccagctacctggccaaacacag
tcgcaggctccgtccaattctccaactcaatccagcgcacaaacggcagcacagctacag
cttgtattggctcagcagcagcaacaatcgccaactaaacctatacagtcacttggcaag
aacccgcagcatcatccttctctccagcagtaccagcaggtagcagacaaatccaagcag
ctatggagctctcctcaagtctccaactcactgggaaagctactgccgcccatgaaacaa
acttatttcatggatggtcgcctgccggccgagcctctgagcatgttggagcagtgcata
cagcacccagtcatgcagcagcctctggagaaaaagatgaagcctttcccaatggatgcc
tacaaccagaacacttctgaaatgaagatgtcagacttctactggggggaccaaacatcc
tacaacttaaatgacaaccgggctcttttggcacagcaatctgttaataaccaaaggtgc
aagcgccagcctaccgcctatcgctcaggccaggactccatgaatagaatgccctttgag
gaaccgaagcgttcccctctcctgcccccggacctgttaaagagtctggctgctctagag
gaggaggaagagctggcattctcccctcctcctgatctttacccagctctgctcggcccc
ctggccactctccctggacgaagcctctttaagtctcttctggaaaagccatctgagctg
atatcccagcccccctctttcctctcgctcactggattttcactgagccaggaaaggttc
ccaagtaacagtgtgttcaatgaggtctacggcaagtcagcatgcggtagcacaaagcct
gaggcctgtccagccattgggcagcaggagacctctctctactctctgtttgagggtaaa
ccatggtccccttctcttccagcaagctcagatcactctacaccagccagccagtcgcct
cactcctcaaacccaagcagtctgcctagctcgccacccacccacaaccacgctgcccaa
cctttctcaaactttgggcccattggaacaccagacagccgagatcgccgtggtgcagac
cgatggaagactgacaaaccagcaatgggtggctttggtttggattacctgtctgtgacc
acctcttcagagaacagctggcggcacataaataattccagcagtgctaatgcttgggca
gctcaaggcaacccaagagaggactcttctgctgcgctcatggagagcttgaagtccatt
tggtcaaccacaatgatgcaccctggtccatcagccctggagcagctcttgatgcagcag
aaggagaagcagcaaagaggccagggatcactgaaccctccgcattga
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integrated database retrieval system
