Pseudophryne corroboree (corroboree frog): 134980607
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Entry
134980607 CDS
T11513
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob04140
Autophagy - animal
pcob04142
Lysosome biogenesis
pcob04148
Efferocytosis
pcob05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
134980607 (VPS39)
04140 Autophagy - animal
134980607 (VPS39)
04148 Efferocytosis
134980607 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
134980607 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcob04131
]
134980607 (VPS39)
Membrane trafficking [BR:
pcob04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
134980607 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
VPS18_solenoid_2nd
VPS3_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
134980607
NCBI-ProteinID:
XP_063803565
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All DBs
Position
12:50477523..50560586
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AA seq
879 aa
AA seq
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MHDAFEQVMILEKLPLQIECLAAWEEWLLVGTKQGHLLLYKVKKEQGCNQFEVTLEKSNK
NFAKKIQQIHVVPQFKILVSLLDNNVCVHDLLTFQLMTTISKAKGASLLSCDLQHGKLGE
ETLKMCVAVRKKLQLYFWKDRSFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLAVPLGDGKVAVGQDDLTVVLNEEGTCTPKCALNWTDIPMAME
HQPPYIIAVLPRYVEVRTFEPRLLVQSIELQRPRFITSGGPNIVYVASNHFVWRLVPVSI
ATQIQQLLQDKQFELALQLARMKDDADGEKRQQINHIQNLYAFNLFCQKRFDESMHVFAK
LGTDPTHVIGMYPDLLPSDYKKQLQYPNPVPLLSGAELEKANLALIDYLTQKRSHLVKKL
NDTDYHSTTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHVEE
SEHVLKKAHKYSELIILYEKKGLHEKALMVLVDQSKKANSPLKGHERTVQYLQRLGAEKI
SLIFEYCVWVLRDYPEDGLKIFTEDLPEVESLPRTLVLTFLLENFKDLAIPYLEHIILTW
EDLEPEFHNCLIKLYCEKVQTLMQAIEPACNDERARCPFPASLEKEEGGEFRSKLLNFLE
ISNCYQPERLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTSMAEQYCHKHYDY
TKDGNKDVYLSLIRMYLSPPDARCLGPIKFKLDEPKPNIAAVLAVLEQHHGKLNTTKAID
LLPVNTQIKDIQVFLEKVLEENAQRKRFNQVLKNLLHAEFLRVQEERISHQQIKCVITEE
KICSVCKKKIGNSAFARYPSGVVVHYFCAKDVSSVDSCT
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctttgagcaggtgatgatcctggagaagctgccgctgcagatagagtgc
ctggcagcctgggaagagtggcttcttgtcggaactaaacaagggcatctactgctgtac
aaagtaaaaaaggagcaaggttgtaatcagtttgaggtgactctggagaaatccaacaag
aactttgctaaaaagattcagcagattcatgttgtgcctcagtttaagatccttgtcagt
ttgcttgataacaatgtgtgtgtccacgatttactcaccttccagctcatgaccaccatt
tcaaaggctaaaggcgcatctctactgtcctgtgatctccagcatggtaaattgggggag
gagacgttgaagatgtgcgtggctgtccgtaaaaaattgcagctgtatttctggaaggac
cgatcatttcatgagctccagggtgattttagtgttcctgatgtccccaaatctatggca
tggtgtgaaaattctatctgtgtaggattcaagagggactattatttgatcagagtggat
gggaaaggctctattaaggaactgtttcccaccggtaaacagttagagccacttgcggtg
ccgctgggtgatggaaaggtggctgttggacaggatgacctgactgtggtgctgaatgag
gaaggcacctgcacacctaagtgtgccctaaactggaccgacatccccatggctatggag
caccagcctccttatataatagctgtgttgccgcggtacgtggaagtgcggacatttgaa
cctcggctgctcgtacaaagtattgagcttcagcgacctcgttttattacatctggagga
ccaaatattgtgtatgtagctagtaatcattttgtgtggaggttggttccagtttccatt
gcaactcagatacagcaactgctccaggacaagcaatttgagcttgctttacagctggca
aggatgaaagatgatgcggatggtgagaagcgacagcagatcaaccatatccagaactta
tacgccttcaacctattttgccaaaaacgatttgatgagtccatgcacgtgttcgccaag
ctgggcactgatcctacccacgttatcggcatgtacccggatctgctgccttctgattat
aaaaaacaacttcagtaccctaatccagtacctttactatcgggagcagaactggaaaaa
gccaatctagcccttatagattacctgacccagaaaagaagtcacttggtaaagaagctg
aatgacacggattaccactccaccacatcccccctcatggaggggaccccaactatcaag
tcaaagaagaaacttcttcagattatagacaccactctactgaagtgttacctgcacact
aacgtggctctggtagcacctctcctgcggctagagaacaatcactgtcacgtggaggag
agtgagcatgttctgaaaaaggcgcacaagtacagtgagctcatcatcctctatgagaag
aaagggctccatgaaaaggctctgatggtactggttgatcagtcaaaaaaagccaattcc
ccattgaaaggccatgaaaggacagtccaatacctgcaacgtttgggagctgaaaaaata
tctctgatttttgagtactgtgtttgggtgctcagagactatcctgaagatggattaaag
atctttacagaagacctcccagaagttgaaagtctaccacgaacccttgtactaacattt
ttattggaaaacttcaaagacctggcaattccatatttggaacatatcatcctgacctgg
gaagatctggaacctgaatttcataactgtctgatcaagctgtactgtgagaaggtgcag
accctgatgcaagctatagaacctgcctgtaatgatgagcgtgcccggtgcccattccct
gcaagcttagagaaggaggaaggaggagaattccgctcaaagctgctaaattttctcgag
atatcaaactgttaccagcctgagcgactgatcagtgatttcccatttgatggactgctg
gaggaacgggccctgctcttgggccggatgggcaaacacgagcaagctttgttcatttat
gtgcacatcctgaaagacaccagcatggcagagcaatactgccacaaacactatgattac
accaaggatggtaataaagatgtctacttgtcgctgatcaggatgtacctctccccaccg
gatgcacgctgcctgggccccattaagtttaagttggatgagccaaagccaaacattgct
gctgtcttggcagtgttggagcagcatcatggaaaactgaacacgactaaggccatagac
cttctgccagtaaacacacagattaaagacattcaggtcttcctggaaaaagtactggag
gagaacgcccagaggaagcgatttaaccaagtcctgaagaaccttctgcatgcagagttc
ttgcgggtacaggaggagaggatttcccaccagcagatcaagtgtgttatcacagaggag
aagatctgcagtgtgtgtaagaaaaagatcggaaacagcgcctttgcccggtatcctagc
ggtgtggttgtccattacttctgtgcaaaggatgtcagctctgtagactcctgtacatga
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