Pseudophryne corroboree (corroboree frog): 135009262
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Entry
135009262 CDS
T11513
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
135009262 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pcob04040
]
135009262 (SCN8A)
Ion channels [BR:
pcob04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
135009262 (SCN8A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
PFF1_TM
Lustrin_cystein
New_glue
Motif
Other DBs
NCBI-GeneID:
135009262
NCBI-ProteinID:
XP_063808329
LinkDB
All DBs
Position
2:207137055..207506300
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AA seq
1834 aa
AA seq
DB search
MLIMCTILTNCVFMTFSNPPDWSKQVEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWN
WLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGHLKRKCVVWPINMDEQYLANGSKGFDFDEYINNDTNFYTV
HGAIDPILCGNGSDAGQCPEGYTCMKAGRNPNFGYTNFDTFSWAFLALFRLMTQDYWENL
YQLTLRASGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEHEFKAM
LEQLKKIQEDQAAAMATSAGTVTEDAVEDEEGDARMSQTSSELSKLSSKSAKERRNRRRK
RKQKELSEGEEKGDNEKVYKSESEDGMRRKGFWYPDTRLGRKFSIMDQSLLSIPGSPYLS
RHNSKSSIFSFRRSFRDPVSENEFADDEHSTVEESEGRRDSLFIPVRHNRTNSYNSGYSQ
GSRSSRIFPNMRRNVKRSSAVDCNGVVSLIGGPGANIPGGRLLPEPTTEVEIKKRPSGSL
RVSMDQLNALFSKKNRANSVLSVLTQTLVEELEESQKKCPPWWYKFADTYLIWTCCPMWV
KFKKIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTEEFESILIVGNLVFTGIFTAEM
FLKLVAMDPYYYFQEGWNIFDSFIVSLSLMELGLQDVEGLSVLRSFRLLRVFKLAKSWPT
LNMLIKIIGNSVGALGNLTVVLAIIVFIFAVVGMQLFGKNYKDCVCKINPDCVLPRWHMH
DFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLVVFLMVMVIGNLVVLNLFLALLLSSF
SADNLAATDDDGEVNNLQISVMRIKKGIAWIKSIVRNFMQKHFKKKNADEKPLDDMYEKK
SCLVNHAGVDINRDMEYQKNGNGTTSGIGSSVEKYIIDEDHMSFINNPNLTVKVPIAVGE
SDFENLNTEDISSVSDEEKMDDTSSSEGSTVDIKPEVEEVPVEQPEEYLDPDNCFTEGCV
ARFKHLDFSIEDGWGKRWWTLRKTCFLIVEHNWFETFIIFMILLSSGALAFEDIYIEQRK
TIRTILEYADKVFTYIFILEMLLKWLAYGFVKFFTNAWCWLDFLIVDVSLVSLVANALGY
SELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGV
NLFAGKYYYCYNETAEDRFPIDVVNNKTDCEYLMNQSNSEVRWKNVKINFDNVGAGYLAL
LQIATFKGWMDIMYAAVDARKVTQQPHYEDSLYMYIYFVIFIIFGSFFTLNLFIGVIIDN
FNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNMFQGAIFDLITQQAFDI
IIMILICLNMVTMMVETDDQSDYAENVLYWINVVFIIFFTTECVLKLCALRHYYFTVGWN
IFDFVVVILSIVGMFLADLITKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMM
SLPALFNIGLLLFLVMFIFSIFGMSNFAYVKREGGIDDMFNFETFGNSMICLFQVTTSAG
WDGLLLPILNRPPDCDIKKENPGSPMQGDCGNPSVGIFFFVSYLIISFLIVVNMYIAIIL
ENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIQFSKLPDFADTLEHPLRVPKPNT
IELIAMDLPMVSGDRIHCLDILFAFTKRVLGESGELDILRQQMEERFVASNPSKVSYEPI
TTTLRRKQEDVSAVVIQQAYRRHLTKQGFVCRNPSSTIMENGGTNMERKEGTPSTASLPS
YDSVTKPEKEKQERIEEAIRERAKKQKYVRDSKY
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atgctcattatgtgcactattttgaccaactgcgtattcatgacttttagtaatcccccg
gactggtctaaacaagtggagtatacctttacgggaatttatacgtttgaatcgcttgtg
aaaatcattgcaagaggcttttgtatagacggttttacatttttgcgggatccatggaat
tggttagatttcagcgttattatgatggcatatgtgacagagtttgtggaccttgggaat
gtctcagcgctgagaacattcagagttctccgagctttgaaaactatctctgtcattcca
ggtctgaagaccattgtgggtgcccttatacagtctgtgaagaaattgtcggatgtaatg
attttgacagtgttttgcctcagtgtctttgctttaatcggtctacagcttttcatgggt
catttaaagcggaagtgtgttgtttggccaatcaacatggacgaacaatatttggccaat
ggcagcaaaggttttgactttgatgaatacattaacaatgacacaaacttttacacagtt
catggagcgattgatccaatactctgtggcaatggttcggatgcagggcaatgtccagag
ggatacacatgtatgaaagcaggcaggaatccaaacttcggctacacaaactttgatacg
tttagttgggcctttctggccttatttcgccttatgactcaggattattgggaaaacttg
taccagttaacccttcgtgcttctggaaaaacatacatgatcttctttgttttggtcatc
tttgttggctctttttacctggtgaatttgattctggctgtagtagctatggcatatgaa
gaacaaaaccaagcaacattggaggaagcagaacagaaggaacatgaattcaaagcgatg
ctggagcagttgaagaaaattcaggaagatcaggcagcagcaatggctacctccgctggt
acggttactgaagatgctgtggaagatgaagaaggggatgccaggatgtcccagacatct
tcagaactgtccaaattgagttctaagagtgcaaaggaaagaaggaatcgcagaaggaaa
agaaaacagaaagaactatctgaaggggaggagaaaggagacaatgaaaaggtgtataaa
tccgaatctgaagacggtatgagaagaaagggtttttggtaccctgacaccaggctggga
agaaaattttcaatcatggatcagtctctactcagcatcccaggctctccttatctgtct
agacataacagcaaaagcagcatcttcagttttcggagaagttttagagatcctgtctct
gaaaatgagtttgcagacgatgaacatagtacagtggaggaaagcgaaggcagacgagac
tccctgttcatcccggtcagacacaatcggacgaacagttacaacagtgggtacagccag
ggaagccgatcatcccgcattttccctaacatgcgaagaaacgttaaacggagcagtgct
gtggattgtaatggcgtggtctcattaattggtggtccgggtgccaatatccctggtgga
cgtcttctgcctgagcctacaacagaagtggaaattaaaaagagaccttctggatctctc
cgggtgtccatggaccaactgaatgcattattctcaaagaagaacagagccaacagtgtt
ttgagtgttctcacacagacccttgtagaagaactggaagaatctcagaagaagtgtcca
ccgtggtggtacaagtttgccgacacatatttgatatggacgtgttgtcctatgtgggta
aaattcaagaaaatagtaaacctgattgtaatggatccctttgtggacttggccataacc
atttgcattgtcctcaatactttattcatggctatggaacactacccaatgacagaagaa
tttgaaagcatattaattgtgggaaatctggtttttactggcatttttacagcagagatg
tttttaaaacttgtagcaatggatccatactattactttcaggaaggctggaacattttt
gacagctttatagtgtctctcagtttaatggagttgggtcttcaggatgtggaaggactt
tcagtgctgcgttcttttcgattgctgagagtcttcaagctagccaagtcctggcctaca
ctaaacatgctgattaaaatcatcgggaactctgttggtgccttgggtaatctgactgtg
gtgctcgccatcattgttttcatctttgctgtggtgggaatgcagttatttgggaagaat
tacaaagactgtgtctgcaaaataaacccagactgcgtgctaccacgttggcacatgcat
gatttttttcattccttccttattgtttttcgagtgttgtgtggagaatggattgaaacc
atgtgggactgcatggaggtcgcaggacaggcaatgtgtctggttgtcttcttgatggtg
atggtcattggtaacttagtggtattgaacctgtttcttgctttgttgctgagctctttc
agtgcagataatctggctgccacagatgatgatggggaagtgaacaaccttcagatatcg
gtcatgcgaataaaaaaagggatagcttggattaaatcaatcgtacgcaactttatgcaa
aagcactttaaaaagaaaaatgctgatgagaaacctttggatgacatgtatgagaaaaaa
agctgcttagttaatcatgcaggggtggacatcaatcgagatatggaatatcagaagaat
ggcaatggcacaaccagtggtattggaagcagtgtggagaaatacatcatagacgaggat
cacatgtctttcataaataacccaaatctcacagtcaaagtgcccattgcagtaggagag
tctgattttgagaatctcaacaccgaagatatcagcagtgtatctgatgaagaaaaaatg
gatgacaccagctcctcagagggaagtactgttgacataaaaccagaagtagaagaagtt
ccagtggaacagccagaagaatatctagatccagataactgctttacagagggctgtgta
gcacgtttcaagcatctggatttcagcatagaagatgggtggggaaagcgatggtggacc
ctgcggaaaacctgttttcttatagtggagcacaactggtttgaaacttttatcatcttc
atgatattgttaagctccggggctctggcatttgaagacatctacatagaacaacgcaag
acaattcgtacaattctcgagtatgcagataaggttttcacttacattttcatcctggaa
atgttgctgaaatggctggcgtatggatttgtcaagttcttcaccaatgcctggtgctgg
ctagacttcctcattgttgatgtctctttagtaagtcttgtagctaatgccctgggctac
tcggaactaggtgccattaagtcccttaggaccttaagagctttgagacccctaagagcc
ttgtcacgatttgaagggatgagggttgtagtcaacgctttggttggtgcaattccttcc
attatgaatgttttgctggtttgcctgatcttctggctgattttcagtatcatgggtgtc
aacctgtttgctggcaaatactactactgttacaacgagacagcagaagacagattccca
atagacgtagtaaacaataagacagattgtgaataccttatgaatcaaagcaattcggaa
gtcagatggaaaaatgtaaagataaattttgacaacgttggagctggataccttgccttg
cttcaaatagctacgtttaagggatggatggatattatgtatgctgcagtggatgccagg
aaggtcacccaacagccacactatgaagacagcctctatatgtacatttactttgtcatt
tttatcatctttggctctttctttacactaaatttattcattggtgtcatcattgataac
ttcaatcaacaaaagaaaaagtttggaggtcaggacatcttcatgacagaagagcagaaa
aagtattacaatgcaatgaagaaattgggctcaaagaagccacagaagcccatccctaga
ccactgaatatgttccaaggagccatctttgatctgatcacacaacaagcatttgacata
atcatcatgattctcatttgtctgaacatggtcaccatgatggtggaaacagacgatcag
agcgattatgcagagaatgtcctctactggattaatgtagtttttattatcttttttacc
acggagtgtgtgttaaaactgtgtgcattgcggcattactactttaccgttggatggaat
atttttgactttgttgttgtaattctctctattgttggtatgttcctggctgatttgatt
acaaaatactttgtgtcaccaacactcttcagagtcatccgtctggctcgtattggccgt
atacttcgcttaatcaaaggagccaaaggaattagaaccctgctttttgccttaatgatg
tcattgccagccttatttaatattggcttgcttttgtttcttgttatgtttatattttcc
atatttggaatgtctaactttgcctatgtgaagagagaaggagggatagacgacatgttc
aactttgagacattcggcaatagtatgatctgcttgtttcaggtcactacctctgctggc
tgggacggcttactgttgcccatcttaaaccgtcccccagattgtgacattaaaaaagag
aatccgggaagtccaatgcaaggtgattgtggaaacccctctgtggggatctttttcttt
gtcagctacttaatcatctcctttcttatagtggtgaatatgtacattgctattatccta
gagaattttagtgtggccacggaagagagcgcagatcctttaagcgaagacgattttgaa
acattttatgaaatttgggagaaatttgaccctgatgccacacagtttatccaatttagc
aaactcccagattttgctgatacattggagcatcctctgagagtacccaagccaaacact
attgaactaattgccatggatttgcctatggtgagcggcgacagaattcattgcctggat
attctgtttgccttcactaaacgtgtacttggagaaagcggagagcttgatatattgcgt
cagcaaatggaagagcgttttgtagcctctaacccttcaaaagtgtcttacgagcccatc
accactacgctcaggcgcaaacaagaggatgtatcagctgtggttattcagcaggcatac
agacgtcacctaacaaaacaaggatttgtatgtagaaacccttcttcaactataatggag
aatgggggaacaaacatggagagaaaggaaggcaccccttctacggcatccctgccatcc
tatgacagtgtaactaaacctgaaaaggaaaaacaagaaagaatagaagaagcaattagg
gagagagcgaaaaaacaaaaatatgtcagggactccaagtattga
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