Pseudophryne corroboree (corroboree frog): 135020121
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Entry
135020121 CDS
T11513
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
pcob Pseudophryne corroboree (corroboree frog)
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcob03000
]
135020121 (SOX1)
Transcription factors [BR:
pcob03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
135020121 (SOX1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
135020121
NCBI-ProteinID:
XP_063809229
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All DBs
Position
2:complement(358400127..358404033)
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AA seq
409 aa
AA seq
DB search
MYSMMMETDLHSPGVQPPSNTGQAGGGGGNKASQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLHAAGGGHMGVGLSPGGGTGGSMGGGGHGGVVVQRLESPGSGASAGAGGYAHM
NGWANGAYPGSVAAAAAAAMMQEAQLAYSQQQQQHPGSGGHHPHHHPHHPHHHHPHHHPH
HNPPPHPPPPPPQPMHRYDMSALQYSPLPGAQSYMSASPSSYGALGYSSSQQQHQGSPSS
AAVAAAAAAAAAAAASSGALGALGSLVKSEPSVSPPVPGGGSHSRPPCPGDLREMISMYL
PSGGEAGDPAAAAAAAAAAAAATSRLHSLPQHYQSAGTGVNGTVPLTHI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagacggacttacactcccccggggtgcagccccctagtaac
acagggcaagccgggggaggagggggcaataaggccagtcaggaccgggtgaagaggccc
atgaacgccttcatggtgtggtccagggggcagaggaggaagatggcccaggagaacccc
aagatgcacaactcggagatcagcaagcggctgggtgcagagtggaaagtcatgtcagag
gccgagaagagacccttcattgacgaggccaagaggctgcgcgccctgcacatgaaggag
cacccggattacaagtaccggcctcggcggaagacgaagactctactcaagaaggacaag
tactccctggccggggggttgctgcatgcggccgggggaggacacatgggagtcggcctg
agcccaggcggagggactggtgggtcaatggggggtgggggacatggaggtgtggtggtg
cagcgcctggagagcccgggctcaggggcatcagccggggccggaggatatgctcacatg
aacggttgggctaatggggcttatccgggctcagtagccgcagcggcggcggctgctatg
atgcaggaggctcaacttgcctacagtcagcaacagcaacagcaccctggtagcgggggg
caccacccgcaccaccaccctcatcacccacaccaccaccacccacaccatcacccacac
cataacccccctccgcaccctccgccgcctcccccgcagccaatgcaccgctatgacatg
agtgccctgcaatacagccccctgcccggcgcacaaagttacatgagcgcctctccttcc
agctacggtgcgctgggctattcctcaagccagcaacagcaccagggatccccgtcctct
gcagcggtggcggcggcggctgcagctgcagctgctgcggcagcatcctctggggccctc
ggggctctaggctctctggtgaaatctgagcccagtgtcagtccacctgttcctgggggt
ggctcccacagccggccgccttgcccaggggaccttcgtgagatgatcagtatgtactta
cccagtgggggggaggctggagacccggctgctgctgcggcggcggcagcggctgcagcg
gcggcaacaagcagactgcacagcttaccgcaacactaccagagcgcagggacaggggta
aacggcacggtgccgctcacacacatctga
DBGET
integrated database retrieval system
