Pseudophryne corroboree (corroboree frog): 135032142
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Entry
135032142 CDS
T11513
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03015
mRNA surveillance pathway
pcob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135032142 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
135032142 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcob03019
]
135032142 (PABPC4)
03041 Spliceosome [BR:
pcob03041
]
135032142 (PABPC4)
Messenger RNA biogenesis [BR:
pcob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135032142 (PABPC4)
mRNA cycle factors
Stress granule specific factors
135032142 (PABPC4)
Spliceosome [BR:
pcob03041
]
Complex C
Other components
Complex C specific factors
135032142 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_3
Motif
Other DBs
NCBI-GeneID:
135032142
NCBI-ProteinID:
XP_063810134
LinkDB
All DBs
Position
2:complement(512116035..512179567)
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AA seq
626 aa
AA seq
DB search
MHTASSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRRERE
AELGAKAKEFTNVYIKNFGEDMDDEHLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFEN
HEDANKAVDDMNGRDVNGKVMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTLINQFQPAPGGYFVPAMPQAQNRP
TYYAPNHMAQMRPSPRWQQTGRPQGFQPMPNTLRQSGPRQSLRHLPPSSTQGTRGIPTVA
QRVALSSATQTIGPRQPVSAPPPRAVTPYKYTRCPLPGVQSLQTPQPAVHVQGQEPLTAS
MLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVE
EAVAVLQAHQAKKDAAQKVGIVVATS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagctagcagcagctaccccatggcgtctctctatgtgggtgacctccacccc
gatgtcaccgaggccatgctgtacgagaagtttagtccagcagggcctgtgctatctata
cgggtgtgcagggacatgatcacacgcaggtccttaggatatgcctatgtcaacttccag
cagcctgcagatgctgagcgtgcgttggacactatgaactttgatgtgattaaaggaaag
cctattcgaattatgtggtctcaacgggacccatctcttaggaaatctggtgtgggcaat
gttttcataaagaatcttgacaaatcaatcgacaacaaagcactttatgacactttttca
gcatttggaaacattctttcatgtaaggtggtgtgtgatgagaatggttccaaggggtac
gcttttgtgcactttgagacacaagacgctgcagatagagccatagagaagatgaacggc
atgctgctcaacgaccgcaaagtgtttgttggacgttttaaatgtcgaagggagcgggaa
gcagagcttggagccaaagcaaaggaattcacaaatgtttacatcaagaactttggggaa
gatatggacgatgagcatctgaaggagactttcagcaaatacgggaaaactctgagcgtt
aaggtgatgactgaccccagtggcaagtccaaagggtttggctttgtgagctttgaaaat
catgaagatgctaataaggccgttgatgacatgaatgggcgggatgtcaatggaaaggtg
atgtttgtgggcagagcacagaagaaggttgaacgacaggctgaactaaaaaggaggttt
gagcagttgaagcaagagaggatcagccgctatcagggtgtaaatttgtacattaaaaat
ttggatgacacaattgatgatgagaagttaaggaaggagttttctccatttggatcaatc
acaagtgccaaggtaatgttagaggatggacgtagcaaaggatttgggtttgtttgcttt
tcatcgccagaagaagccacaaaagcagtcactgagatgaatgggagaattgtaggctcc
aaacctctttatgtggccttggctcaaaggaaggaagaacgcaaagctcatcttaccaac
cagtatatgcaacgtatagcaggaatgagggccctacctgccaacactcttatcaatcag
tttcagcctgcacctggtggatactttgtgccagctatgccacaggctcaaaacagacct
acatattatgcacctaatcatatggctcagatgcgaccaagtccccgctggcaacagacg
gggcgcccccaaggctttcagcccatgcccaacacactgcgacaaagtggccctcgtcag
tcactacgtcatctgccaccttcaagcactcagggtacccgtggtatacccaccgtagcc
cagagagttgctttatcttctgctactcagacaataggcccacgacaaccagtctctgct
cctccaccccgagctgttactccatacaagtacacccgttgcccacttcctggagtgcag
tctttgcagacaccgcagcctgctgttcatgtgcagggtcaggaacctctcacagcctca
atgcttgctgccgccccaccccaagaacagaagcagatgttgggggagcgtctcttccct
ctcattcaagccatgcacccatcattggcgggtaagattacaggaatgctgctggaaatt
gacaactcagagcttctacacatgctggagtccccagaatccctgcgctccaaggtagag
gaagctgtggctgttttgcaagctcaccaagccaagaaggatgctgcacagaaggtggga
atcgttgttgctacctcctga
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