Pseudophryne corroboree (corroboree frog): 135050011
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Entry
135050011 CDS
T11513
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135050011 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcob03041
]
135050011 (PRPF8)
Spliceosome [BR:
pcob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135050011 (PRPF8)
Complex C
U5 SnRNP specific factors
135050011 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
135050011
NCBI-ProteinID:
XP_063812163
LinkDB
All DBs
Position
2:complement(908663156..908749898)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGMFPYRPGLPPMPGPPGVAPDYMSEDKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVSEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDNEEDAPVMDWFYDHQPLRDNRKYVNGTTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGRTRR
AVDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWDTTEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDVATE
ATHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGGKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWVHTQPNESPQLSPQDVSTHAKVMADNPAWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYQ
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggctggtatgtttccctacagacctgggcttcccccgatgcctggacccccaggtgta
gcacctgattacatgtctgaagataagttgcaggagaaagctagaaaatggcagcagctc
caggccaaacgttatgcagagaaaaggaagtttggatttgtggatgctcagaaagaggac
atgcctccagagcatgtgcgcaaaatcatccgtgaccatggtgacatgaccaacagaaaa
ttccggcatgataagcgagtttatcttggagctttgaagtatatgcctcatgctgtgctg
aaattactggagaatatgcccatgccttgggagcagatccgcgatgtgccagtgttgtat
cacattacaggagccatctcttttgtcagcgagatcccttgggttattgagcctgtctac
atagcacagtgggggtccatgtggatcatgatgagacgagaaaagagagacaggcgacat
ttcaagaggatgaggttccctccttttgatgatgaagaacctcctctggattatgcagat
aacatccttgatgtggagccgctggaagccatccaactggaattggacaatgaggaagat
gctccagttatggactggttctatgaccaccagccactaagagacaacagaaaatatgta
aatggaacaacataccagcgttggcaatttacacttccaatgatgtctacactgtaccga
ttggccaatcagctgctcacagatctagtagatgacaactacttctatctatttgactta
aaggcctttttcacctctaaggctttaaacatggcaattcctggtgggccaaaatttgag
cctttggttcgagacattaacttacaggatgaggactggaatgaatttaatgatatcaac
aaaatcattatccgccagccaattcgcacagagtacaagattgcattcccttatctgtac
aacaaccttccccatcacgtacacctgacatggtaccacacaccaaatgtagtgttcatt
aaaacagaggatcctgacctgccagctttctattttgatcctctgatcaatcccatatca
cacagacactctgtaaagagtcaagagcctttaccagaggatgatgaagagtttgagttg
ccagaatatgttgagcccttccttaaagaaactcctctgtataccgataacacagccaac
ggcattgccttgctttgggctcctcgtcctttcaatttgaggtctggccgaaccaggaga
gctgttgacatacctctggtgaagaattggtatcgggagcactgtcctgcaggccagcca
gttaaagtgcgtgtgtcctaccaaaaacttctgaaatattatgtgctcaatgctcttaaa
cacagaccacccaaagctcagaagaagagatatctcttccgttcatttaaagctacaaag
ttcttccagtccacaaagctggactgggtagaggtcggcctgcaggtttgccgtcagggt
tacaacatgttgaacttgctgatccacagaaagaaccttaactatcttcatttggactac
aattttaatctcaaaccagtcaaaacactgaccacaaaggaacgtaagaagtctcggttc
ggcaatgcctttcacttgtgccgagaagtgttacgtctgaccaaactggtggttgacagc
cacgtgcagtacagacttggtaatgtggatgcttttcagttgtctgatgggctacagtac
atctttgctcatgttggccagctgactggaatgtacaggtacaagtacaaactcatgaga
cagatccgaatgtgcaaagacttgaaacatctgatttactacaggttcaacacaggccca
gtggggaaagggccaggctgtggcttttgggcagcaggctggagagtttggctattcttt
atgcgtggcatcacccctttgctggagagatggctaggaaatctgctggccaggcagttt
gaaggtcgtcattccaaaggggtagccaaaactgtgacaaagcagagggtagagtctcac
ttcgatctggagctcagggcagcggtcatgcatgacattttggatatgatgccagaaggc
atcaagcagaacaaagccagaaccattctgcaacacttgagtgaagcctggagatgctgg
aaggcgaacattccatggaaagtgccaggtctccccacacctattgagaacatgattctg
cgttacgtaaaggcgaaagctgactggtggacgaacactgcccattacaacagagaacgt
attcgccgtggtgcaactgtggacaaaacggtgtgcaaaaaaaatctgggccgactgacc
agactgtacctgaaagctgagcaagagagacaacacaactatctgaaggatgggccgtac
atcactgctgaagaggctgtagctgtgtacaccaccactgtccactggctggagagcaga
aggttctcccctattccattccctcctctctcatacaagcacgatactaaactactcatc
ttggccctggagagattgaaggaggcatacagtgtaaagtctcgcctaaatcagtcccag
agagaggaattgggattaattgaacaagcatacgacaatcctcacgaagccttgtccagg
atcaagcgtcacttacttactcagagagcctttaaggaggtgggaattgagttcatggat
ctctacagtcacctggtccctgtttatgatgtggagcccctggagaaaattactgatgct
taccttgaccaatacctgtggtatgaggcggacaagaggcgtctcttccctccttggatc
aaacctgcagatactgagccacctccactgctagtgtacaagtggtgccaaggcattaac
aacctgcaggatgtgtgggacaccactgagggcgaatgcaatgtgatgctggagtcacgc
tttgagaagatgtacgaaaagattgacttgactctgttgaatcgtctgttacgtctcatt
gttgatcacaacattgctgattatatgactgcaaaaaacaacgtggtgatcaattacaaa
gacatgaatcacacaaactcgtatggcataatccgtggcttgcagtttgcctctttcatt
gttcagtactacgggctggtgatggacctgttagtcctggggttgcacagagccagcgag
atggccggtccaccgcagatgccaaatgatttcttgagtttccaggatgtggccacagaa
gccactcaccccattcgcctctattgcagatatattgatcgcattcatatattttttcga
ttttcagcggatgaggctcgagatcttattcagagataccttacagagcacccagacccc
aataatgagaatattgtgggctacaacaacaaaaagtgctggccaagagatgccaggatg
cgactcatgaagcatgatgtcaatcttggccgtgctgtgttttgggacattaaaaatcgc
ctgcctcgttctgtcacaacggtgcagtgggaaaacagctttgtgtctgtgtacagcaaa
gataatcccaatttgctattcaatatgtgtggatttgaatgccgtattcttcccaagtgt
cgtacaagctatgaagaattcactcacaaggatggtgtctggaacctgcaaaatgaggtg
actaaagaacgtacagctcagtgtttcctgcgagtggacgatgagtccatgcagagattc
cacaacagagttcgtcagattctcatggcttcagggtccactacatttaccaagattgtg
aataagtggaacactgcattgattggccttatgacctatttccgtgaagctgtggtcaat
acgcaggagctacttgatctattagtgaaatgtgagaacaaaatccaaaccagaataaag
attggactgaactctaaaatgccaagtcgtttcccaccggtggtcttctacacacccaaa
gaacttggaggtctaggcatgttatctatgggacacgtacttatcccacagtctgacctc
agatggtctaagcagacagacgttgggatcacccatttccggtctggtatgagccacgag
gaggatcagctgattcctaacttgtatcgctacatccagccctgggagagcgagtttatt
gactcgcagagagtgtgggctgaatatgctctgaaaagacaagaggccattgctcagaac
aggcgtcttactctggaggacttggaggattcatgggatagaggtattccacgcataaac
acgctcttccagaaggaccggcacaccctggcttacgacaagggttggagagttcgtacc
gatttcaagcagtaccaggtactgaaacagaacccattctggtggacacatcagcgtcac
gatgggaagctctggaatctgaataattaccggacagacatgatccaggcacttggaggc
gtggaaggcattctggagcacacactattcaaaggcacttacttccccacttgggagggt
cttttctgggaaaaagccagcggctttgaagaatctatgaagtggaagaaattgaccaat
gctcagaggtctggtctgaaccagatccccaacagaagattcactctctggtggtctccc
acaatcaacagagctaatgtatatgttggattccaggtgcaattggatttgactggcatt
ttcatgcatggcaaaattcccacattaaagatctctttgattcagatcttcagggcccac
ttgtggcagaagatccatgagagcattgtcatggacctgtgtcaggtgtttgaccaagag
ctcgatgctctggaaattgagactgttcagaaggagaccatccaccctaggaagtcttat
aagatgaactcatcttgtgctgatatcttgctttttgcttcctacaagtggaacgtgtcc
cgcccatctctgcttgctgactccaaggatgtaatggatagcactaccacacagaagtac
tggattgatatccagttgagatggggagattatgattcccatgacattgagcgatatgct
cgtgcaaagttcctggactacactactgataacatgagtatatacccatcgcccaccggt
gtgctgattgccatagacttggcctataaccttcacagtgcctatggcaattggttccct
ggaggcaagcccctgatacagcaagcaatggccaagataatgaaagcaaaccctgccctc
tatgtgctgcgtgagcgcatccgtaagggtttgcagctgtattcctctgagcccactgag
ccttacttgtcctcccagaactatggcgagctcttctccaatcagatcatctggtttgtg
gatgacacaaatgtctacagagtgaccatccacaagacttttgaaggtaacttgacaacc
aagcccatcaatggagccattttcatatttaaccccaggactggacagcttttcctgaaa
attatccacacttctgtgtgggcaggacagaagcgattgggtcagctggcgaagtggaaa
actgcagaagaagttgctgctttgatccgttctttgccagtagaggagcagccgaagcaa
atcattgttaccaggaagggcatgttggatcctctggaagtacacttgttggacttccct
aacatcgtaatcaagggatctgaactgcagctgcctttccaggcctgtctgaaggtggaa
aagtttggagatctgatcttaaaggccactgagccacagatggttctcttcaatctctat
gatgactggctgaagaccatttcttcatacactgcattctctcgactgatcttgattctg
cgagcactgcatgtcaacaatgatcgcgcaaaggtgatcctaaagccagacaagacgaca
atcaccgagcctcaccatatctggcccacactaacagatgaggaatggattaaggtggaa
gttcagctgaaggatctgattttggcagactatggaaagaagaacaatgtaaatgtggct
tccctaacacagtctgagatcagagatatcatcttgggtatggaaatctctgccccatct
cagcagagacagcagatcgcagaaattgagaagcagacaaaggaacagtctcagcttact
gctactcagacacgtacagtcaacaagcatggggatgagataatcacttccaccaccagt
aactatgagacgcagaccttctcctccaagacagagtggcgagtcagagcgatatctgct
gctaatcttcacctgcgaaccaaccacatctatgtgtcctccgatgatatcaaggaaact
ggttatacctacatcttgcccaagaatgtgttaaagaaatttatctgcatctcggacttg
cgagctcagattgctggctatctgtatggagtgagtccgcctgataaccctcaggtgaag
gaaattcgctgcattgtgatggtgccacagtggggaactcatcagactgttcacttgcca
agccagttgccacagcatgagtacctgaaggaaatggagcctttaggatgggttcacact
cagccgaacgagtctccacagctgtctccccaagatgtttccactcacgctaaggtcatg
gctgataatccggcctgggatggggagaaaacaatcattataacttgcagtttcaccccc
gggtcctgcacacttactgcttataaactgacacccagcggttatgagtgggggaggcag
aacaccgataaaggaaacaaccccaaaggctacctgccatctcactacgagagagtccag
atgctgctgtctgatcggttccttggctttttcatggtgccagcacagggatcttggaac
tacaactttatgggtgttagacatgatcccaacatgaagtatgaattacagctggctaac
cccaaagagttctaccatgaagttcaccgcccctcgcactttttgaacttcgccttgctg
caggagggcgaagtgtactcagctgaccgagaagacctgtatcaatag
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integrated database retrieval system
