Pseudophryne corroboree (corroboree frog): 135055436
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Entry
135055436 CDS
T11513
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pcob
Pseudophryne corroboree (corroboree frog)
Pathway
pcob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135055436 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcob03041
]
135055436 (DDX42)
Enzymes [BR:
pcob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135055436 (DDX42)
Spliceosome [BR:
pcob03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135055436 (DDX42)
Complex B
135055436 (DDX42)
Complex C
U2 SnRNP specific factors
135055436 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
135055436
NCBI-ProteinID:
XP_063815580
LinkDB
All DBs
Position
3:complement(322780390..322803778)
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AA seq
947 aa
AA seq
DB search
MAMNWNKGGPSGKRGFGFGGFALNTGKKEEPKLPQSSHSAFRGPPSVFGAANSSQLPSFY
KIGSKRANFDEENAYFDDEEEDSSNVDLPYIPAENSPTRQQLRSKTDSDSEEDPLEAFMA
EVEDQAAKDMRKLEEKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGLLPEEEEDNL
EYDSDGNPIAPTTKRIIDPLPSIDHTEIEYPPFEKNFYEEHEEITVLTPQQIVELRYKLN
LRVSGAAPPRPASSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALNGRDMIGIAKTG
SGKTAAFIWPMLVHIMDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRATYLVFDEADRMFDMGFEYQ
VRSIANHVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDITQMVEILTS
GPDKWNWVTRRLVEFTSAGSVVLFVTKKANAEELANNLRVEDHPLGLLHGDMDQSERNKV
ITDFKKKNIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNIGGGGLGY
RERPGLGAETSSERVVGGNVMSNYEAFKPTGGAMGDRLSAMKAAFQSQYKNHFVAASLNT
QKTGTSTVNSGAWTSAGSLSSVPSTTPQPAAPPTELTPPPPPRTMPGFTSSGTLCSIPTA
FPPLGNPSFPATSQVSTKEGSSGGREGSGGRDKYSEGRGRHGEGHRHSDRGGHRHGEGHR
HSSSGRHGESRNGAEGRRDSDGRRESSRDSEGRRESSRDREDSRRDSFGDGRRESSRDGG
ENRKESSRDGESRREGPRDDGEIRKEEKSETFAVPDPPKRKKSRWDS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggccatgaactggaataaagggggcccaagtggcaagcgcggatttggatttggggga
tttgccctcaatacagggaaaaaggaggagccgaagcttccgcagtcttctcatagtgct
ttccgtggacccccttctgtctttggcgctgcaaacagctcccagctcccctctttctac
aagattggatctaagagagccaacttcgatgaagagaatgcatactttgacgatgaggaa
gaagactccagtaatgtggacctgccctacattccagcagagaattctccaacaaggcag
cagcttcgctcaaaaacagattcggacagtgaagaagatccactggaggcctttatggca
gaagtggaggaccaggctgccaaggacatgaggaaattggaggaaaaagacaaggagaag
aagaacgccaagggtatcagagacgacattgaggaagaagatgaccaggaagcatacttc
cgatacatggctgagaacccaacggctgggcttcttcctgaagaggaggaagacaatctg
gaatatgacagtgatggtaaccccatcgctccaacaacaaaacgcataatcgatccttta
ccttctatagaccatacagagatagagtatccaccttttgagaagaatttctacgaggaa
cacgaggaaatcaccgttctgactcctcagcagattgtggagttgaggtacaagctgaac
ctacgggtctctggggcagctccaccacggccagccagcagctttgctcactttgggttt
gatgagcagctcatgcatcagattaggaagtcagaatacacccaacccacacccatccag
tgtcagggtgtcccagtagcgctcaatgggcgtgacatgatcggcatcgctaaaactggg
agcggtaaaacggcagcttttatctggccaatgctagtgcacattatggatcagaaggaa
cttcagcctggggatggacccattgctgtcatcgtttgtcccactcgcgagttgtgccag
cagattcatagtgaatgtaagcggtttgggaaggcgtacaacttgcgctccgtggctgtt
tatggtgggggcagtatgtgggagcaggcaaaagctctacaggaaggagcagagattgta
gtgtgtaccccgggacgtctgattgaccatgtgaagaaaaaggctaccaacctccagcgg
gccacataccttgtttttgatgaagctgatcgtatgtttgatatgggttttgaatatcaa
gttcgatctattgctaaccatgtgaggccggacagacaaaccctcctgttcagtgccacc
tttcgtaagaagattgaaagactggccagagatatactgattgatcctatccgcgttgtt
cagggggatatcggagaggctaatgaggacatcactcagatggtggagatacttacctct
ggtccagacaagtggaactgggtgactcgcaggctagtggaattcacatctgcaggaagc
gttgttctttttgtcacaaagaaggctaatgctgaagagctggccaacaacctgcgcgtg
gaggatcatccactaggtcttcttcatggagacatggaccagagtgaaaggaacaaagtc
atcactgactttaagaagaaaaatatccccatcctggttgctacagatgtagctgctcga
ggtttggacattccatctatcaagaccgtaattaactatgatgtggcacgagatattgac
acgcatactcatcgtatcggccggacaggcagagcgggtgagaagggtgtagcttacact
cttttaacgccaaaagacagtaattttgccggggacttggtgaggaatctggaaggggcc
aaccagtatgtgtcaaaagagctgctggacctggctatgcagaattcttggtttcggaag
tctcgtttcaaagctgggaaaggcaagaaattgaacataggtggaggtggcctaggctac
cgtgagcgtccaggacttggagcagagacctcttctgaacgcgtagtgggtggtaatgtg
atgagcaactatgaggcctttaagcctactggaggcgcaatgggagaccggctgtccgca
atgaaggctgcatttcagtctcaatacaaaaatcattttgttgctgccagcctgaacaca
cagaaaactggaacatccacagtcaactctggagcatggacaagtgcaggcagcttaagc
tctgttcccagtaccacaccacagcctgcagcgccaccaacagaactgactcctcctcca
cctccaagaaccatgccaggctttactagcagtggaacactctgtagcatccccactgcc
tttcccccactgggtaatccaagtttccctgcaactagtcaggttagtactaaagaaggg
tctagtggtggcagagaagggagtggagggcgagataaatacagtgaaggaagggggcgg
catggtgaaggacatcgtcatagtgacagaggtggacaccgccatggagagggacataga
cattccagtagtgggcggcatggggagagccgtaatggggcagagggaagaagagatagt
gatggacggagagagagctcccgagatagtgaaggaaggagagaaagctcccgcgacagg
gaagacagtcgaagagacagctttggagatggacggagagaaagctcccgtgacggagga
gaaaaccggaaagagagctcacgagatggtgaaagtcgcagagaagggccccgggatgat
ggggaaatccgaaaagaagaaaagagtgaaacttttgcagtgccagatcctccaaagcgg
aagaagagtagatgggacagttaa
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