Pseudophryne corroboree (corroboree frog): 135056520
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Entry
135056520 CDS
T11513
Symbol
JMJD1C
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
pcob Pseudophryne corroboree (corroboree frog)
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcob03036
]
135056520 (JMJD1C)
Chromosome and associated proteins [BR:
pcob03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
135056520 (JMJD1C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
zf-C5HC2
C1_2
FYVE
KDM6_GATAL
Motif
Other DBs
NCBI-GeneID:
135056520
NCBI-ProteinID:
XP_063817891
LinkDB
All DBs
Position
3:complement(655529433..655968415)
Genome browser
AA seq
2534 aa
AA seq
DB search
MALGARPELVGKRFVCVVRGGEEPPELGEIGQIGRWGWRAGVIRAVSHRDNSNPELAVYV
EFDDLEWDKREWVKVYEDFTAFFVEFQLVWAKRKDPSQAQGSKVKQVQWPALAFKPLVGE
GAYNSITAIEFLVERHLEFATEDSAFQPYQDEVDSLNPVLRDNPQLHEDVKAWVKEHKVQ
EIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQVLEPQNVDPSMVQ
MTFLDDVVYSLLKGENIGITSRRRSRSNQNSNTIHGHYTRAQANSPRPAMNSQSSTKQSQ
HRNARLNKRKGSDSSMPDEDRIKEERYDGTGRGENVKRNKHFHSKRRKPEDDEKKLILKR
LRTDNISDFSESSDSENSNKRIIDSSSEQNSENELKSKNTSKINGDEGKSQSSEGAEEQT
LIDRHSHWDEIQEDKKQQDAERHKSADLKLQKENSQFLLSEQTALYEQNSNKPHVQDSVV
ERNNITDLLQTEPLISKPPTPKNSIVLAHENSLDKPPQESSSNHFNAQPAAKKELLQGSD
PKQSFVSVHFSSVKKLDPEHDWNDNVNSKGDMALSGVLKAPQSTNKEMNDREKIYHTSVI
GSTSLTDEQKRLQKQTLDALKTKPYPLETSSKIKFSSSPDVLKSRPVHSPDSLKLKMNYH
NSQSSVMMRAVSKMDCDMHRSSFHPVAARVSAIESTKSPLIIDKNEHFTVYRDPALVGPE
TAASHISPYLHQHNFALHSPAHRACLPPNSHHPALTANPHMLTSSSNQTPMTAISAHQLG
STSHHSVHHPHLLPTVLPGMPPGTLLGGHPQLETAHASSLSHLALAHQQQMLQHQPPHLL
GQAHPPASYNQLGLYPIIWQYPNGSHAYSGLGLPSSKWVHPENHVNAESSIRRNTASPWL
HQPTPVTSADGLLMGHLPVRPSSADPHRPLKLATHPSPPLSKPSADHHKEDLEKKTFSDP
MRSVSSATAKSDHEHSRMHSGKDSHIHRHYMEPVLSHTKLQRSVTETVERQNKYKEEHKR
ILQESIDATSFSMKMKAHENDRESYTRVTPIVSCNPKSHLVKQENNVERPISDLYKIKNS
VAQSLPQSNYFTTLSNSVVNEPPRSFASKEAVNVYSEKQNVSSSSTNSSMNSYMSSLSKP
PPLIKHQPEDGSVNKLSEQIPQQVATHTITSYRGDSRSPTQLSISSSNALRSMPALHRAP
VFHPPIHHSLDRKDVSYSNLSPPTLTPVQPVNTGGKIPELQKPPTLVPEPKEGAATYKKS
AEKSVQEVWKTIEKQNHSKIQWMPEKNHVKVPSATASVIVRPQSSAKYDNMPVTQTVLKE
RTGERSSAGINQSDSSKPLEARETVRNAQSITNSDSTHMLFEKNSQAPSQSITSSSTPGT
NIMCSTKTDVTTSAPTTTSVSSSCGSEVTYSLSNAVLTCTVIERTTSVSGNQVVGHAQES
SVNATTSAPPASCKTASAIQPNASYPPSSDFIHLKKHKAALAAAQLKSSNASDTETIAVK
NQTFPASGSPDNSTPCSSTNTTSSAGNGQTSQCSQPNYHTKLKKAWLTRHSEEDKNTNTK
PESAGSTMVSEIIKPCTVNLIASTSSELQNNLDLRAQDDKSPKEDRLTRRRVKRTYESGS
ESDDSDESESKSGQRLKRQPKPTYKKKQNDMQRRKGDTDKEEEIKPNGILSRSAKEKSKL
KLQSNSSSTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRLIRTKKGD
ESTHSPVFCRFYYFRRLSFSKNGVVRIDGFSTPDQYDDEALSLWTHENYEDDELDLHSIK
YILGYIGDKFCQLVTSEKAAMSWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKC
GFVVCLDCYKAKERKSSRDRELYTWLKCVKGQPHDYKHLMPTQIIPSSVLTDLLEAMHNL
RDKFVIKSNCQCTIKQNSQSSKFPAMNGVSQVLQNVLNHSNKISLSLPDLQQHSPSQKPE
ANGSLSPGSDTSTDSKLASSESHSSLHWLADLAEQKSREEKKENKERPVGKHIKEDQDNE
TVNCKSSSPISQSTEQGSTLRDLLTTTAGKLRLGSTDAGIAFAPVYTAGNPNGKGGRSMP
NILDDIIASVVENKIPATRPPKPSVKSEPKEEIPDSRKPPPDENTRTHNEIPHSWICDRH
ILWLKDHKHNSNWKLFRECWKQGKTVLVSGNQKKMTACLWKSEAVSSDFGDHQGDLLNCK
EGVVSSGNVKEFWDGFEDVSKRQKLKNGETVLLKLKDQPSGEDFKNMMLARHEEFFRMLP
VPEYCNPDGKFNLASHMPTFFVRPDLGPRMCSAYGVVATKDQDTGTTNLHIEVSDMVNIL
VYVGAMKNNVAASKSGVLKKFEEEDLDECLKKRLKDTSEVPGSLWHIYEPKDADKIREFL
HKAAKEQCLEILPDHDPIRDQNWYLSKKLRQSLLEDYNVKSHALVQFLGDAIILPAGAIY
QVQNFHSCIQVTQDFVSPEHLVHSFHLTQELRLSKEEINFDDKLQVKNILYHSVKEMVRA
LKFYEEELKDMEES
NT seq
7605 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgggagcacggccggagctggtcgggaagcgcttcgtctgtgtggtccgtgga
ggagaggagccgccggagctcggggagatcgggcagatcggccgctggggctggagagcc
ggggtgatacgtgcggtgtctcaccgggacaacagcaacccggagctggcggtatacgtg
gaatttgatgacctagagtgggataaacgagaatgggtgaaagtatatgaagattttaca
gccttttttgtggagttccagctggtctgggcaaagaggaaagaccccagccaggctcag
ggatcaaaggtcaagcaagtccagtggcctgccttggctttcaagcccctggttggagaa
ggtgcatacaactcaattactgcaatagaatttttagtggagagacatctggaatttgca
actgaagatagtgcctttcagccctatcaggatgaagtagacagtctaaatccagttctc
agggacaacccccagcttcatgaggacgtgaaagcctgggttaaagaacacaaggttcag
gagatttttatgcaaggtccgtattccttaaacggctaccgagtgagggtctacagacaa
gactctgccacccagtggttcactggtataattactcaccatgaccttttcacccgcact
atgattgttatgaatgatcaggttctagagccacagaatgttgacccttctatggttcag
atgacctttctagatgacgttgtatactctttgttgaaaggtgaaaatattggcatcaca
tctcgccgcaggtcgcgctccaaccaaaatagcaacacaattcatggtcattatacacgt
gcgcaagcaaatagtccaagaccagcgatgaactctcagagctccacaaaacagagtcag
caccgaaatgcccgcttaaacaagaggaaagggtcggacagcagcatgcccgatgaagat
aggattaaagaagaaagatatgatggtactggtaggggagaaaatgtaaaaaggaacaaa
cattttcacagcaagaggaggaaacccgaggacgatgaaaagaaattaattctgaaaagg
ctgcggacagacaatatttcagacttctccgagagcagcgactcagaaaattcaaataaa
aggataatagattcttcctccgagcaaaattccgagaacgagttgaaaagcaagaacact
tcaaagataaatggagacgaaggaaaatcccaaagtagcgaaggggctgaggaacagaca
ctaatagataggcattctcactgggatgaaatacaggaagataaaaagcagcaagacgca
gaaagacacaagtcagctgacttaaagctacagaaagaaaactctcagtttctcctatcc
gaacagacagcactttatgagcagaattccaataaaccgcatgttcaagatagcgtggtt
gagaggaacaatattactgacttattacagactgagccacttatcagcaagccccccaca
cccaaaaactctattgtcttagctcacgaaaacagtttggacaaaccaccccaggaaagc
agttcaaatcattttaacgcacagcccgctgccaagaaggagttactacaaggcagcgac
ccaaagcagtcatttgtcagtgtccatttttccagcgtaaagaagctggatcctgaacat
gactggaatgacaatgtgaacagtaagggggacatggcactttcaggggtattaaaggca
ccccagtctactaataaggagatgaatgaccgagagaaaatctaccatacctccgtcatc
ggcagcacatccttaacagatgaacagaagaggcttcaaaaacaaacgctggatgctctt
aagacaaaaccatacccattggaaacctccagtaaaataaaattcagttcatctccggat
gtattaaagtctcggccggtccattcgccggattcgttgaaactcaagatgaactatcac
aatagtcagagttctgtaatgatgagggcggtgagtaaaatggattgtgatatgcacaga
tccagcttccacccagtggcagccagagtgagtgcgattgagtctacaaaaagtccgctt
attatagacaaaaatgaacattttacagtttacagggacccagcacttgttggaccagag
acagcagctagtcacatttctccttatttgcaccagcacaattttgctcttcattctccg
gctcatcgagcatgtttacctccaaacagccaccaccccgcactaaccgctaaccctcat
atgttaacgtcgtcctcaaaccaaacgcctatgactgctatcagtgcccatcagctgggc
agcacatcccaccattcagtccaccatcctcacttactacctacggtgctacctggcatg
ccccctggcactttgttaggaggccaccctcagctagagactgcacatgccagcagcctt
agccatttggcacttgcacatcagcagcaaatgttacagcaccagccacctcatcttttg
ggccaagctcaccctccagcctcatataaccaactaggactttatccaattatctggcag
tatccaaatggaagccatgcttactccggccttggcctgccctcctcaaaatgggtgcat
ccggagaatcatgtcaatgcggagtcttccattagaaggaacactgccagtccttggttg
caccagcccacacctgtgacttcagcagacggtctactaatgggtcacctccctgtacgt
ccatccagcgctgacccccataggccactcaagctggctacacatccaagtccaccctta
tctaagccttctgcagatcaccataaagaagatctagagaagaagactttcagcgaccca
atgcgctcagttagttcagcaacagcaaagtctgaccatgaacacagccggatgcactcg
gggaaagacagccatatacacagacattatatggagcctgtattgagccacaccaagttg
caacgctctgtgacggagactgtagagaggcagaacaaatataaggaagaacataagcga
atccttcaagaaagtattgatgcaacctccttttccatgaaaatgaaagcacatgaaaat
gatcgcgagagctacactagggtgacacccattgtgtcttgcaaccccaaaagccacttg
gttaaacaggaaaataatgtagagcgccctatttcagatttgtacaaaataaaaaattca
gttgcacaaagtttgcctcaaagtaactatttcaccacattatccaatagtgtggtgaat
gaacctccgaggtcattcgcgtctaaggaagccgtaaatgtgtactctgaaaagcaaaat
gtcagctcttcttcaacaaattcttctatgaattcatatatgtcatccctgtctaagcca
ccgcccttgattaaacaccaacctgaagacggatcagtgaataaattaagtgagcagatt
cctcaacaggtggcaactcacacaattacctcctataggggagatagcagaagtccgact
cagttgtccatctcctcctcgaacgcactccgtagcatgcctgcccttcatagggcgcca
gttttccatcctccgattcaccacagtcttgataggaaagatgttagctatagcaacctt
tctccaccaaccctcactccagtgcagcctgtaaacactggaggaaaaatcccagaactt
cagaaacccccgactttagtccccgagcccaaggaaggtgctgcaacttacaagaagagt
gctgaaaaatccgtccaggaagtgtggaaaaccattgagaagcaaaaccacagtaaaatc
cagtggatgccagagaaaaatcatgtcaaggtaccgtcggcaactgcgtctgtcattgta
cgcccacaatctagtgcaaagtatgataacatgccagtaactcagacagtcttgaaggaa
cgaactggcgagagatcctcagctggaatcaatcaatcggatagctcaaagcccctggaa
gccagagagactgtgaggaatgctcaatcaattacgaattcagacagcactcatatgctc
tttgagaagaactctcaagctccctcacagagcattaccagctcatccacacctggaact
aatataatgtgcagtacgaaaactgatgtgaccacctctgcccccaccacaacaagcgtt
tcaagttcctgcggatcagaggtaacttactctttatccaatgctgttttgacttgtaca
gtgatagagcgcaccacctctgtctctggaaatcaggttgtgggacacgctcaagagagt
tcagttaatgccacaacatcagcccctccggccagctgcaagactgcaagtgcaattcaa
cccaacgcttcatatcccccttcaagtgactttatccatttaaaaaagcacaaggcagcg
ttggctgcagctcagttgaaaagcagtaatgccagtgatacagagaccattgctgtgaaa
aatcagacctttccagcctcaggctctccagataacagcacaccctgcagctcaacaaac
acaacaagctctgcaggcaatgggcagacttcccaatgcagccagccaaattatcacaca
aaactgaaaaaggcctggctcaccagacattcagaagaggataaaaacactaacactaag
ccagagagcgcaggcagcactatggtctctgaaataattaagccttgcactgtcaatctg
attgcttcaacctccagcgagctccagaataacctcgaccttcgagcgcaggatgacaag
tctcccaaggaggataggcttacgaggaggagggttaaaaggacttacgaatctggctca
gaaagcgacgactcggatgaaagcgagagcaagtctggacaaaggctgaaacgtcagccc
aagccaacatacaaaaagaagcaaaatgatatgcagaggcgaaaaggtgacacagacaaa
gaggaggaaataaaacccaatggtattctgagccgtagtgccaaggagaaaagcaaattg
aagttacagagcaatagttccagcactggcatacctcgttcagtattaaaagactggcgg
aaagtgaagaaactcaagcagaccggggaatcctttctgcaggatgactcttgctgtgag
attgggccaaatctacagaaatgcagggaatgccgactgatccgtaccaaaaaaggcgac
gagtccacccactctcctgtattctgcagattttattacttccgaaggttatctttcagt
aaaaatggggttgttagaatagatggattctctacccctgaccagtatgacgatgaagcg
ctgagtttatggacgcacgagaactatgaagatgatgagttggatctacactctattaag
tatatcttgggttacattggtgataaattctgtcagttggtgacgtccgaaaaagctgcc
atgtcctgggtgaagaaggatgcaaaaatagcctggaagagagcggtgcgaggtgttcgc
gagatgtgcgatgcctgtgaggccaccttgtttaacattcactgggtctgccagaaatgt
ggatttgtggtctgtctggattgttacaaggcgaaggaaaggaaaagttctcgagataga
gagttatacacttggctgaaatgtgtaaagggacaacctcatgattacaagcaccttatg
cccacacagattattccaagttcggttctgactgacctcctagaagcaatgcacaacctc
cgagataaatttgtaattaaatcaaactgccagtgtaccattaaacagaactcacaaagc
agcaagttcccggcaatgaatggagtgtcgcaggtgttgcaaaacgtcctgaatcacagt
aacaagatatctctaagcttgccagacctacagcagcacagtccttctcaaaagcctgaa
gccaatggtagcctgagcccagggagtgacacaagcacagacagcaagctggcttcctca
gaatcccattcctctctgcactggctagcggacctggccgaacagaagtctagggaagaa
aagaaagagaataaagaacgtccagtgggcaaacatatcaaggaagaccaagataatgag
accgtaaactgcaaatcctcctcacccatatcgcaaagcaccgagcaaggctccaccctg
cgggacctgctgactactaccgccggcaaactacgcctggggtcaacagatgcaggcatc
gcctttgcgcccgtttacacggcaggaaatccaaacggtaaaggcggacggtctatgcca
aacatcttggatgacatcattgcctcggtggttgaaaacaagattcctgccacaaggcca
cctaaacccagcgtgaaatctgagccaaaggaggaaataccagacagccgcaagccacca
ccggatgagaacacaagaacacacaatgagattccacattcttggatctgtgatcgtcac
attttatggctaaaagatcataaacataacagcaactggaagctcttcagagagtgctgg
aagcaaggaaagactgttctggtctctgggaatcaaaaaaaaatgactgcatgtctgtgg
aaatcagaggcagtgagcagtgacttcggggaccaccaaggggatcttctgaactgcaag
gagggtgttgtgtccagtggcaacgtgaaggagttctgggatggatttgaagacgtctcc
aagcgtcagaaactgaaaaatggagagaccgtgcttctgaagctgaaagatcagccttcc
ggagaggactttaaaaacatgatgcttgcaaggcatgaagagttctttaggatgctccca
gtcccagaatactgcaacccagatgggaaattcaacctggcgtctcacatgccaactttc
tttgtgcgtccagacttgggcccaaggatgtgcagtgcatatggagtcgttgccacgaag
gatcaggacacgggcacaacaaatcttcatattgaagtgtcagacatggtgaacattctg
gtgtatgttggtgcaatgaaaaacaatgtggcagccagtaaatcaggtgtgttgaagaag
tttgaagaggaggacctagatgaatgcttgaagaaaagactgaaggacaccagtgaagtt
ccgggttctctgtggcacatttatgagcctaaagatgctgacaaaatccgagagtttctc
cataaggctgcaaaagagcagtgtctagaaatccttcctgaccatgacccaatacgagac
cagaactggtacctaagcaagaaactccgccaaagtctccttgaagattataacgtgaaa
agccacgcgctcgtccagttcctcggagacgcaatcatattgcccgcaggcgccatttat
caggtgcaaaactttcacagctgcatccaagtgacccaggactttgtgtccccagagcac
cttgttcactcatttcatctaacccaggagctgaggctttctaaagaagaaattaatttt
gatgataaactgcaggttaaaaacatcttgtaccattcagtgaaagaaatggtaagagct
ctgaagttttacgaagaagaactaaaagacatggaggaatcctaa
DBGET
integrated database retrieval system
