Phasianus colchicus (Ring-necked pheasant): 116225762
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Entry
116225762 CDS
T07365
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoc03019
]
116225762 (HTT)
04131 Membrane trafficking [BR:
pcoc04131
]
116225762 (HTT)
03029 Mitochondrial biogenesis [BR:
pcoc03029
]
116225762 (HTT)
Messenger RNA biogenesis [BR:
pcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116225762 (HTT)
Membrane trafficking [BR:
pcoc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
116225762 (HTT)
Mitochondrial biogenesis [BR:
pcoc03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
116225762 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
116225762
NCBI-ProteinID:
XP_031444179
Ensembl:
ENSPCLG00000001669
LinkDB
All DBs
Position
Unknown
AA seq
3096 aa
AA seq
DB search
MATMEKLMKAFESLRSFQQQQVPAAIPEESLQRPKKELSTTKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRMQYFYAWLLNV
LLGLLVPVEDDHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKEAEISPSPEQL
VQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTALGGIAQVSVSKDESAIR
NRSGSIVELIAGGGSSCSPALARKHKGKILLGEEEGLEDDAETRSDVSTASFAASVKGEI
TSELASSSGVSTAGSVGSSAADPTGHDIITEQPRSQHTLQSDSVDLSSCDLTSTATEGED
DDVLSRSSSQISAVQSDPTMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGT
EGQYSGMQIGQLQDEEDEAANILQDDSSDSFRSSSIALQQPHLLKTMSHSRQPSDSSVDR
FPSKEDAVEPIDHENKPSRVKGDIGHYTDGNSAPLVHCVRLLSASFLLTGEKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKIPLEAMGEDYEEQYVSDILNYIDHGDPQIR
GATAILCGTIINSILLKSRFDVEKWLVNVRSSTGNLFSLVDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEG
KTDSLHKGVHHYTGLLKLQERVLNDVVICLLGDEDPRVRHVAAASLMRLVPKLFYNCDQG
QADPVVAVARDQSNVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRV
VAAISHALTISTTRSLTFGCCEALCLLSTTFPVCTWTVGWHCGVSQPSPSDDTQKGCTVG
MAGMVLSLLSSTWFPLDLSAHQDALILTGNLLAASAPRCLKNPWSAEEDSNQGAAKQEEP
WPALADRTLVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKTALPSLTNPPSLSPIRRKG
KEKEPVEQVSVPMSPKKGGETSPATRQTDASAPATTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNSNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYDGLSSNTSKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTNIASAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAVIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRVQELSFSPYLISRQAINRLRHGENNISAQE
DHTEVKQTKYLPEETFSRFLLQLVGILLEDIVTKQVKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMVPTHPSLVLLWCQILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPQISGDSDESDSESKRGMCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSITQLPVEELDRIQEYLQNSGLATRHQRLYSLLDRFRLMVAPDTTSPSPQVTLHPLDG
EDQPGLENVILDKDWYMSLVRSQCCIKSDSALLEGAELLNRIPQPDLNSFMNSKEFNLSL
LAPCLSLGMNEISRDQKSSLFEAARRVTLDHVSATVLNLPASHQVFQPLLPTEPSAYWKK
LNDIFGDEVMYQSVMTLCRALAQYLLLLSKLPSSLRVPPDKEDDILKFVVMSIEALSWHL
IHDRLPISIDLQAALDCCCLTLQQPSLWNLLASAVNVTYACSLINCIKFIIEAVAVEPGN
QLLSPERKKNASKGLCENEVDSNMHKVKHVTAACEMIAELVECLQTVLALGHHRNSSIPA
FLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPAGDFGTVFPEIPVEFLQEKEIF
KEFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAI
TSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRD
NIATHHLYQAWDPVPSLSPISTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGN
NITPLREEEWGEDEEDENDIPVPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPS
SPNKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILIQYLIPAT
CKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPII
CEYLLSNLRAVAHCVTVHNQQHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGS
DESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCM
YTGKEKVSPSRSTDANPAAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDD
FFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQR
TPVAMAVWSLSCFFVSASTSQWISAVLPHIISRMGKLEQVDVNIFCLVAMDFYRHQIDEE
LDRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9291 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgaaggccttcgagtcgctgcgctccttccagcagcag
caggtgccggccgccatccccgaggagtcgctgcagagaccaaagaaggaactttcaact
accaagaaagatcgagtgaatcattgcctgacaatatgtgaaaacattgttgctcagtct
ttaagaaattctccagaatttcagaaactgctggggattgctatggaactttttctcctc
tgcagtgaggatgcagaatctgatgtccgaatggttgctgatgaatgccttaataaagtt
attaaagctttgatggattccaatctacctaggttacaattagaactgtataaggagatc
aaaaagaatggtgcttcccgaagcctgcgtgctgcactgtggagatttgctgagcttgct
catctagttcggcctcagaaatgcagaccatacttagtgaaccttttaccctgtttaaca
cgaataagtaagagacccgaagaatccgtacaagaaacattagctgcagcaataccaaaa
atcatggcagcatttggcaattttgcaaacgacaatgagattaaggttttattgaaggct
tttatagctaatcttaagtccagttcccctactatccgtcgaacagctgcgggatcagca
gttagcatctgtcaacattcgcgaagaatgcagtatttttatgcctggttattgaatgta
cttttaggtttgttggttcctgtagaagatgatcatcctacacttttaattctgggtgtt
ttacttacgctgagatatctcatacctttattgcaacaacaagtaaaggataccagcctg
aaaggcagttttggtgtaacaaggaaagaagcagagatttcaccttcaccagaacagctt
gtacaggtttatgaattgactctgcattacactcagcatcaggaccataacgttgtgact
ggagctttagaattactacaacagctctttagaacaccaccacctgaacttctccatgct
ttgactgctttaggtggcattgcacaggtcagtgtatccaaagatgaatctgccatcagg
aaccgcagtgggagcatagtggagctcatagctggaggggggtcttcatgcagccctgct
cttgcgagaaagcataaaggtaaaatactgcttggtgaagaagaaggtttagaagatgat
gctgaaacccgatcagatgtcagcactgcatcatttgcagcttctgtgaaaggcgagata
acgagtgaactagcttcttcatctggtgtatcaacagctgggtcagtagggagttcagct
gctgatcctactggccacgatatcattactgaacagccacgttctcaacatacgttgcag
tcagactctgtagacctgtcaagctgtgatttgacaagtacagctactgaaggggaagat
gatgatgtgcttagtcgaagctctagccagatcagtgctgttcaatcagatcccactatg
gacttgaatgatggtacacaggcttcctcaccaattagtgatagctctcagactactact
gaaggtccagactctgctgtaaccccttcggacagttctgaaattgttttggagggtact
gaaggacagtattctggaatgcagattggacagctgcaggatgaggaagacgaagctgca
aatattctccaggatgattcatcagactctttcaggagttcttctattgctcttcagcag
cctcacctgttgaaaaccatgagccatagtaggcagccttctgatagcagtgttgacaga
tttccatcaaaagaagatgcagtggaacctattgatcatgaaaataagccctccagggta
aaaggagacataggtcactacaccgatggaaattctgcgcctttagtacattgtgttaga
cttctgtcagcctcttttctacttactggggagaaaggggctttagttccagatagagat
gtgagagtcagtgtaaaagccttggcagtaagttgtgttggagcagctgttgcccttcat
cccgagtctttcttcagcaaattgtataagataccccttgaagcaatgggagaagattat
gaggagcagtatgtatcagatattctgaactacattgaccatggagatccccagattaga
ggagctactgctattctctgtggaacaattatcaattctattctacttaaatcacgcttt
gatgtggagaaatggctagtaaatgtcagaagctcaacaggaaatctattttccttggta
gactgcatacctctattacagaaaacactgaaagatgagtcctctgttacatgcaagctg
gcttgtacagctgtgaggcattgcatcatgagcttgtgtagtagcagttatagtgaacta
ggcttgcaattaattgttgacctcctcacgctgaagaatagctcatactggctagtgagg
acagaacttctggaaacacttgcagaggtggattttcggctagtcagctttttggaagga
aaaactgacagcttgcacaaaggtgttcatcattatactggtctactaaaacttcaggag
agagtgctcaatgatgttgtaatctgtttgcttggagatgaagatccaagagtacgacat
gttgctgcagcttcattaatgaggcttgttccaaagctattttataactgtgatcaagga
caagctgatccagttgtggcagtagcaagggaccaaagcaatgtctacctgaaactacta
atgcatgaaacacagcctccatctcactttgcagtgagcactatcactagaacatataga
ggttacaatatgctgcaaagtccaacagatgtcactatggaaaacaatctttcaagggtt
gttgctgcaatttcccatgcgttgacaatatccactacaagatcacttacatttggctgc
tgtgaagctttgtgtcttctctccacaacctttccagtctgcacctggactgtaggatgg
cactgtggtgtttcccagccaagtccttcagatgacactcagaagggctgcactgttgga
atggccggcatggtcctctctcttctttcatcaacatggttccctctggacctttctgcc
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaggtgctta
aagaacccttggagtgctgaagaagattcaaaccaaggagctgcaaagcaggaggaaccg
tggccagctctggcagatcgaactcttgttactttggtagaacagctcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtaatggatgatgttgctcctggcccagcagta
aaaacagcgttgccttctctcacaaacccaccttctcttagtccaattcggaggaaagga
aaagagaaggagcctgtagagcaggtttctgtgccaatgagccctaaaaaaggtggtgaa
actagtccagctactaggcaaacagatgctagtgctcctgctacaacaagtaaatcatct
tcagtaggaagcttttatcatcttccatcatatctgaagttatacgatgtcttgaaagca
acccatgctaactataaggttactttggatctccagaacagtaatgaaaaatttggatgc
ttcttacgttctgccttagatgttctgtcacaaatcttggaacttgcaactcttcaagac
attggaaagtgtgtggaagaaatcctgggatatctaaaatcatgtttcaacagagaacca
acaatggcaacagtttgtgtacagcagttactgaaaacattatttgggacaaatctggct
tctcagtatgatggcttgtcttcaaacaccagcaaagctcaaggcaaagctcaacgctta
ggttcttccaatttgagacctggtctctatcattattgcttcatggcaccatatacccat
tttacacaggcacttgctgatgcaagtctaagaaatatggttcaggctgagcaagaacac
gatgcttcagggtggtttgatgtgctgcagaaagtttctacacagctgaaaactaacatt
gccagtgcagcaaagcaccgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacactacaacaacatcagtgcagctacag
agacaagttttagacttgcttgctcaactggttcagctacgagttaactactgtcttctg
gattcggatcaggtgttcattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagagaatcggaagcagttattccaaatatcttcttttttctggtgttgctgtct
tacgagcggtatcattccaaacagataattggaattccaaagatcattcaactgtgtgat
ggcatcatggccagtgggaggaaagctgttacgcatgcaataccagctctgcagcccatc
gttcatgatctgtttgtgttaagaggaacaaataaagctgatgctggaaaagagttggaa
acccagaaggaggtggtggtgtcaatgctgctgagacttattcagtaccatcaggtgctg
gaaatgttcatcttagtattgcaacagtgtcataaagaaaatgaagacaaatggaaaaga
ttatctcggcaaatagctgacattattctcccaatgctcgcaaaacaacagatgcacata
gattctcatgatgctctgggagtactgaatactctgtttgaaattttggctccttcttcc
cttcgccccgttgacatgcttttaagaagtatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctatggatttctggaattttagctatcctgagagttctcatttca
caatccacagaagacatagttctatctcgtgttcaagagctttctttctcaccatatttg
atttcacgtcaagcaattaacagactgagacatggtgaaaataacatatctgcacaagag
gatcacactgaagttaaacagaccaaatatctgcctgaagagacattttctagattcttg
ttacagctggttggtattctactcgaagatattgttaccaaacaagtgaaagtggacatg
aatgagcagcaacacactttctattgccaggagctgggcactttgcttatgtgcttaata
catatcttcaaatcagggatgtttagaagaatcacagctgcagccacaaggctttttaca
ggagatggatctgatggtagtttctatacccttgaaagtctgagtgaccttgttcagtcc
atggttcccacacatccttccttagttctcctctggtgtcagatcctgcttcttgttaat
tacacaaactacaactggtggtcggaagttcatcaaactccaaagagacacagtctttct
actactaaattacttagccctcagatatctggagacagtgatgaatcagattcggaatct
aaacgtggcatgtgcaatcgagagatagtgagaagaggagcactcattcttttttgtgac
tatgtgtgtcaaaacctacatgattcagaacacttgacttggcttattgtgaatcatgtt
caagacttgattaatctatcccatgagcctccagtacaggacttcattagtgctgttcac
agaaattcagcagccagtggtcttttcatccaggccattcaatcacggtgtgagaatctt
gcagctccaacgactctgaagaagactttacagtgcttagaggggatacatctcagccag
tctggagcagtcttgacattgtatgttgataagcttctttgtactccattccgtgtgctt
gctcgcatggttgacacactggcttgccgtcgggtagaaatgcttttggctgcaacttta
cagaacagcattactcagttaccagttgaagaactggatagaattcaggaataccttcaa
aacagtggattagcaacgagacaccaaagactttactcactcttggatagatttcgactc
atggtggcaccagacacaactagtccttcacctcaggttaccttgcacccactagatgga
gaagaccaaccaggtttagagaatgtaattctagataaagactggtatatgtctctagtg
aggtctcagtgttgcatcaagtctgactcagcactgctagaaggtgcagaactgttaaac
agaattcctcagcctgacctgaactccttcatgaacagcaaggaattcaacctgagcttg
ttagcaccttgtttaagccttggcatgaatgaaatctcacgagaccagaagagtagcctt
tttgaagcagctcggagggtaacactggatcatgtgtctgccactgtactaaaccttcct
gccagccaccaggttttccaaccacttttgccaactgagccatcggcctactggaaaaaa
ctaaacgatatctttggcgatgaggtgatgtatcagtctgtgatgacgctttgtcgtgcg
ctcgctcagtatttgttgttactctcaaaactaccatccagtctccgtgttcctcctgac
aaagaggatgacatcctgaaatttgtagtgatgtcaatagaggcattatcatggcattta
atacatgaccgacttccaataagtatagatctgcaagctgctctggattgctgctgtctg
actttacagcagcctagcctctggaatttgctggcttctgcagttaatgtgacatatgct
tgctccttaattaattgcattaagtttatcatagaagcagttgcagttgaacctgggaat
caacttcttagtccagaaagaaagaagaatgcttcaaaaggcttatgtgagaatgaagtt
gattcaaacatgcacaaagtgaaacacgttactgcagcttgtgaaatgatagctgagttg
gtggaatgtttgcagactgtcctggctttgggtcatcatagaaacagcagtatcccagcg
tttcttactccggtcctcaagaatatcatcatcagtttagcaaggctgcctctagtgaat
agttacacaagagtgcctcccttggtctggaaattaggctggtcgccaaagcctgcaggt
gactttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaagaaatcttt
aaagagttcatctatcgcattaacacacttggatggatcagccgtacccagtttgaagag
acttgggctactttacttggtgtacttgtaactcagcctattgtaatggaccaagaagag
aaccaacaagaggaagatacagagaggacccaaattaatgttcttgcagtacaagccata
acttccttggtgctgagtgcaatgacaatacctgttgcaggcaatccagcagtcagttgt
ttggaacagcagcctcgcaacaaagctttaaaagctctggacacaaggtttgggaggaag
ctaagtgttatcaggggaattgttgaacaagaaatccaagcaatggtatctaagagagat
aatattgctactcatcacttatatcaagcttgggaccctgttccatcactttctcctatt
agcacaggtgctcttatcagccatgaaaaactcttattgcaaatcaatactgaacgagaa
ataggagatatggattataaactgggacaggtctctatacattcgatatggttaggaaat
aatatcactccattgagagaagaagagtggggtgaggatgaggaagatgagaatgacata
cctgttccttcctcaccaccaacctctcctattaacaccaggaagcatcgggctggtgta
gatatacattcttgttctcagttcttacttgaactatatagtcagtggatattgccatca
agccctaacaagagaacgccagtcatattgattagtgaagtcgtgcgatcactcctggca
gtatcagacttatttacagaaagaaatcagtttgagatgatgtatacaacgttgacagaa
ttgcgaaaggtgcatccatcagaagatgagattcttatacagtatttgataccagccact
tgtaaggctgcagctgttcttgggatggataaagctgtggctgaaccagtaagtcgactg
ctggaatctaccttaagaagcactcatatgccgagtcgaatcggggctctgcatggaatt
ctttatatccttgagtgtgacttgcttgatgaaacagcaaagcaactcattccaatcatc
tgcgagtatttactctccaatttgagagcagtagcacattgtgtgactgtccataaccaa
cagcatatcttagtaatgtgtgcagctgcgttttatttgatagagaactatccacttgat
gtaggacctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagt
gatgaatcaacaccatccattatttaccattgtgtcctgaggggattagaacgacttctc
ctttcagagcagctttccaggctggatagtgaatctctggttaaactgagtgttgacaga
gtgaatgtgcagagtccccacagagcaatggcagctcttgggctaatgctgacttgcatg
tacacaggaaaggaaaaagtcagccccagtcgttccacagatgcaaatcctgcagccccc
gacagtgaatctgtgatcgtggctatggaacgagtatctgttctttttgataggatcagg
aagggatttccttttgaagctagagtagtggcccgaatccttccccaattccttgatgac
ttttttcctccacaagatgtaatgaataaagttattggagaatttctatccaatcagcag
ccttatccacaatttatggcaacagtagtttataaggtattccagacactacataccact
ggacagtcctcaatggtccgtgactgggtgatgctgtctctctctaatttcacacaaaga
acacctgtggcaatggcagtgtggagtctttcctgtttttttgtcagtgcttccaccagt
caatggatttcggcagttcttccacatattatcagcagaatgggaaaactggagcaagtg
gatgttaacatcttctgtttggtggccatggacttttaccgacatcagattgatgaagaa
ttagatcggagggcttttcagtcagtgtttgaggtggtagcatctccaggaactccatat
catcgcctcctaacttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
