Phasianus colchicus (Ring-necked pheasant): 116225858
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Entry
116225858 CDS
T07365
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03030
DNA replication
pcoc03410
Base excision repair
pcoc03420
Nucleotide excision repair
pcoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116225858 (RFC1)
03410 Base excision repair
116225858 (RFC1)
03420 Nucleotide excision repair
116225858 (RFC1)
03430 Mismatch repair
116225858 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcoc03032
]
116225858 (RFC1)
03400 DNA repair and recombination proteins [BR:
pcoc03400
]
116225858 (RFC1)
DNA replication proteins [BR:
pcoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116225858 (RFC1)
DNA repair and recombination proteins [BR:
pcoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116225858 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
Rad17
AAA_14
AAA_22
BRCT_2
AAA_5
AAA_30
RuvB_N
RNA_helicase
AAA_18
AAA_16
AAA_33
AAA_17
AAA_7
nSTAND3
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
116225858
NCBI-ProteinID:
XP_031444343
Ensembl:
ENSPCLG00000001939
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MAGSRATGRKPAAPSGPGAEKRGVSLRGRRDQPAEPPHTAGPAPPRPSRCDDSGAPGGGS
WREGCGARGGRKPWSRRRPASEITNAAASSMDIRKFFGVVPPGKRQECQAVKKSEKIKNG
EGESSGKKRGKETKVKSSPSEDVPKQKQAHKKKRIIYDSDSEEEVQSVKKTKKASEKKAA
TPKLGKVLKQHPVVYVSETDEEDDFVNKRISLKPKENGTSAISCPGTATVKKGDVKPQAK
IKPLSPVKLTPTSALDYFGTRSVQRSEKKLVASKRKEPSQSGDSTLDDEAIARQLQLEED
SELERQLHEDEEFARTLAMLDETPQKKKARRDSEEQTVLSIKSSPNVMERYKQSQRAKAT
SSAGEVKEQTKSENSKEPNLHPQSSDGKIARALTEKTLPLKPTSKLVALKQKEETTKKES
GTQNLLSKEKYATGKEEKRTPKKEKISPKKAESISPEDSEKRRSNYQAYRSFLNREGPKA
LGSKEIPQGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRD
CGQSKCEKASALGTKIIDEDGLFDLVRTMPGKKSKYELAAETEAKKAESRHKKTPQKTES
GKRNFSPLKREADRKKSNCTPEKGGTFKSVKKEATAIRKLKDFEHQTVEKKEAPKPKGTL
VSESSENKTETLLWVDKYKPASLKAIIGQQGEQSCANKLLRWLRSWHKNTSEDGQAKTNK
PGGKDDGASFKAALLSGPPGVGKTTTASLVCKELGYSYVELNASDTRSKNSLKEVVAESL
NNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDR
NHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVL
HNLNMWCAKEKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFAAGEEASRMSLIDKSDLFF
HDYSLAPLFVQENYVHVKPAAAGGDLKKHLMLLSRAADSICDGDLVDKQIRTKQNWNLLP
TQAIYSSVLPGELMRGYMSQFPVFPSWLGKFSSTGKHERIIQELAMHMSLRTQACKRTVN
MEYLSHLRDALIQPLKAFGADGVQDAIAFMDSYCLMKEDIENIMEISMWGGKPSPFSKLD
PKVKAAFTRAYNKEVHLTPYSLHSVKMSRRQSGSMGTSELNEELNVEEIQSDEEEQDTVE
SDAMIKQKKVKSSKLPKREKNEETTKKEGKRKEKTRH
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcagccgagcaaccggccgaaagccagcggctcccagcgggccgggcgctgag
aagcgcggcgtgtccctgagaggacggcgggaccaacccgcggagccgccccacacggcc
ggccccgccccgccccgcccatcgcgctgtgacgacagcggcgcgcccggtggcgggagt
tggcgcgaaggttgcggggcgcggggtgggcggaagccatggagtcggaggcgtcccgct
agcgagatcaccaacgccgccgccagcagcatggatatccggaaattctttggcgttgtg
cctcctggaaagcgacaggagtgccaggctgtgaaaaagagtgagaagataaaaaatggg
gaaggagaatcaagtgggaagaagaggggaaaggaaacaaaggtgaagagttcacccagt
gaagatgttcccaaacaaaagcaggcacacaagaaaaaaagaataatctatgattcagat
tcagaagaggaggtgcagtctgtgaaaaaaaccaagaaggcatcagagaagaaagccgct
actccaaaacttggtaaagttctaaagcagcatcctgttgtctatgtttcagagacagat
gaagaagatgactttgtcaacaagagaatttccctgaaaccgaaggagaatgggacatca
gcaatcagttgtccaggaacagcaacggtgaaaaaaggcgatgtaaagccacaggctaaa
atcaaaccattatctccagtgaaactgactcccacctcagctcttgattactttgggaca
agaagtgtccagcgatcagaaaaaaaactggtagcgagtaaaaggaaggaaccttcacag
agcggagacagcactctagatgatgaggccattgctaggcaactgcagcttgaagaagat
tcagagctggagagacagctgcatgaagatgaagaatttgctagaactttggcaatgttg
gatgaaacaccacagaagaaaaaggctcggagagattcggaggagcaaacggtgttgagc
atcaaaagcagtcctaatgtgatggaaagatacaaacaatcccaaagagcgaaagcaaca
agctcggcaggtgaagtaaaagaacaaactaaatctgaaaattcaaaagagcctaattta
catccacagtcatctgatggtaaaatagcaagggcactgacagagaaaaccttgcctttg
aaacctacctcaaagcttgtggctctgaaacagaaggaggaaactactaaaaaggaaagt
ggcactcaaaatttactttcaaaagaaaaatatgctacagggaaagaagagaaaagaaca
cccaagaaggagaaaatttctcccaagaaggctgagtctataagtcctgaggactctgaa
aagagacgaagcaactatcaagcctaccgaagcttcctcaaccgcgagggtccgaaagct
ctgggttccaaagagatacctcaaggagctgaaaactgcttggaaggcctgacgttcgta
attacaggagttctggagtccattgaaagagatgaggccaagtctctgattgaacgttac
ggaggaaaagtaactggcaatgtcagcaagaagacaaactatctggttatgggacgagac
tgcggacagtctaagtgtgaaaaggcatcagctttagggacaaaaattattgatgaggat
gggctatttgatcttgttcgaactatgccaggcaagaagtccaagtatgagctggcagct
gaaacagaggcgaagaaggcagagtcaagacataaaaagacaccacagaaaaccgagtct
ggcaaaaggaattttagtcctctcaaaagggaagctgataggaagaaaagtaattgtaca
cctgaaaagggaggtaccttcaaatctgtcaagaaagaagctactgccattcgaaagctt
aaggactttgaacatcaaactgtggagaagaaagaagcccccaaacctaaggggaccttg
gtttctgagagcagtgaaaataaaacagagacattactatgggtagataaatacaagcct
gcatctcttaaggcgataattggacagcagggtgagcaaagctgtgccaataaactcctc
cgatggctccgaagctggcacaagaatacctcagaagatggacaagcaaagaccaacaaa
cctggaggcaaagatgatggtgctagttttaaagcagcattgctctctggtccacctgga
gttggtaaaactaccacagcttctttagtttgtaaggagctggggtacagctatgtggaa
ctgaatgccagtgacactcgaagtaagaacagtctaaaggaagtagttgctgaatcactg
aacaacaccagcatcaaagacttctgttctggcacatcctcatcagttagcgggaaacat
gtattgatcatggatgaagtggatggtatggcaggcaatgaagacagaggagggattcag
gaactgattggtttgattagacacacaaagatacccatcatctgtatgtgtaacgatcga
aaccatccaaaaattcgttccttggtccactattgctttgatcttcgttttcagagacct
cgcctagaacagattaagggtgccatgatgtctattgcatttaaagaaggtttgaaaatt
ccaccacctgctatgaacgagataatcctggcagcaaatcaagacatcagacaggtttta
cataatctcaatatgtggtgtgcaaaagagaaatcattgacttatgatgaggccaaaaca
gacgccagcagagccaaaaaggatatcaaactgggcccttttgatgttgtccggaaggtt
tttgctgctggagaggaggcttctcgtatgtctcttatagacaaatcagatctcttcttc
catgactattccctagcacctctctttgtccaagagaactatgtgcatgtgaaacctgct
gctgctggaggagatctgaagaaacacttgatgctcttgagcagagctgctgatagtata
tgtgatggtgatctggtggacaaacagattcgtaccaagcaaaactggaaccttctaccg
acacaggctatttattcaagtgttcttcctggggagctgatgagaggttacatgtcccag
tttcctgtctttcccagctggctggggaaattttcatctacgggcaaacatgaacgtatc
atccaagaactggcaatgcacatgagcctgagaacccaggcatgcaagaggacagtaaat
atggaatatttgtctcatctgcgtgatgcactcatccagccactgaaagcctttggagca
gatggggtacaagatgctatagcattcatggactcttactgcctgatgaaagaagacatt
gaaaacataatggaaataagcatgtggggaggtaaacccagtcctttttcaaagctggat
cccaaggtcaaggcagcttttacacgtgcctacaacaaagaggtgcacctgactccatat
tcccttcattctgtgaagatgtccagacggcagtcaggatccatggggacctctgaactg
aatgaagaactgaatgtggaagagatccaatctgatgaggaggagcaagatactgttgaa
agtgatgcaatgatcaagcaaaaaaaggtgaagtcttccaagctgccaaaaagagagaaa
aatgaagaaacaacaaaaaaagaaggtaaaagaaaagagaaaacaagacattaa
DBGET
integrated database retrieval system
