Phasianus colchicus (Ring-necked pheasant): 116226817
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Entry
116226817 CDS
T07365
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
116226817
NCBI-ProteinID:
XP_031445663
Ensembl:
ENSPCLG00000000454
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MLIRTCFFFACLPVASHVWGRGGQGSGRLKLTVLSEDRLQMKWKETEGNISGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEDLKNASQTR
NNRRSSGAAPGKNLTSAGSSTAVQSLEMETAPPPLSTVVTHPAKDRAEKKRHKGTQPKGS
GETMRNQPSVGVTQTPSPTTKSSQRITANVERESLGKEKPTRDSLRRGYQFQCDTSAMTD
IVLLVDGSWSIGRNNFKLIKEFLSALISPFNIAQDKIRVGLSQYSSDPRTEWDLSAYATR
DQVLEAVRNLRYKGGNTFTGLALTHVLEQNLKPDAGARLEAEKLVIVLTDGKSQDDANLA
AQTLKNMGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVGRLTRVLCSRI
KERSSKESAGRAVKDIPTNTGPQLSPTDLKISAVTSKSMHLAWSPPLSPPKKYRVVYNPS
KGGTPKEVLLDGAVSSLWLSNLTSHTEYLVSVFPIYDAAVGDGLRGVTSTLPLSAPRSLR
VSELSHNSIKLSWKAAQGATQYLVLCSAAPDGEEDYSTEMKVAEPEVLLDGLSPSTEYSI
AVYALYGEDASDPASIQETTLALSPPRYLSFSELSHSSVRVSWEPASLAVKGHRVTYVSS
RGSNTGEIEVLGTAVSTVLRPLSSLTQYFISVRSVYDEGDSFPITGNVTTLKVPPPRALK
VSELSENSLRLHWEAVAASDVVVYQIKWSTAGGEKPQELSIAGNVATAILPGLQKNTDYK
ISIWAYYKDGARSDTVSIQHRTTSRSPPTNLFIDSESPTSLQIHWKPPEGRIQHYRITYS
PVSDPSTQQTIMASGKSSSVTLQPLLPDRAYKVAVSAVHYTGESESTTATGRTAPVMSKL
PSIRGFVPSKTEACPPISSSAGSVRGFDMMEAFGLVEKEYASIKGVAMEPFVFSGSRTFT
LFRDIQLTLRTSDVHLFTIPPEHTISILLRLLPDTPKEPFAVWQITDEDFQPLLGVNLDP
SKKTLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHLAVSLFKIKLYLDCKKIAERPI
NTIGSISTAGFIMLGKVTRTRGPRSGSVSFQLQSLQVVCNSLGAEEDRCCDLPALRDEES
CPSIAPACSCTSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGKVGPAGPSGQQ
GSPGSQGITIQGPVGPPGIKGEKGDTGSPGMQGIPGVQGAPGRDGLQGAKGVRGLEGTAG
PPGPPGPRGFQGVTGSRGSSGEKGPPGDVGPTGLPGPKGERGEKVSFPGTVHQALERLDV
GEPQSLATIYQLVSQACERMIQSHVLKFDSFIHEHARKPVPVWEERLKPGEPGSPGPPGP
PGSNGERGENGIPGQTGKDGYPGERGAPGPKGEKGMAGVNEEGIQGPRGRTGPPGEVVLG
KPGPKGYPGNTGPQGFPGVRGQPGQPGYSGGCDVSGCYGPGRRDFIP
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcgtacctgcttcttttttgcctgcctgcctgtggcgagccacgtctgggga
cgaggggggcaagggtcaggccggctgaaactcacagtcctttcagaagacaggctccaa
atgaaatggaaagaaaccgaaggaaacatcagtggctacaaagtgcgggtgaagcccatg
gcaggggactcggagcaagaagtcatgctgaaaacaaagactcccaaagccacagtgggg
gggctgagccctaccaaggaatacacactgcaggtctatgtgctcaatggctcccaggaa
gccttattcgccaagaggaaatttgtgatagaggaccttaaaaatgcatcccagactaga
aataaccgaaggagctcaggagctgcaccaggaaagaatctcacctctgcgggcagctca
acagcagtgcagagcctggagatggagactgctccaccacccctgagcaccgtcgtgaca
catccagcaaaggacagagctgaaaagaaaaggcacaaagggactcagcccaagggctca
ggagaaaccatgaggaaccagcccagtgttggtgtgacacaaacaccatcaccaaccaca
aagtcatcccagcgtatcactgcaaacgtggagcgagagtctctaggaaaagaaaaaccc
acaagggattcactgaggagaggttaccagttccagtgtgacacgtctgccatgaccgat
atcgtcctgcttgtggatggatcatggagcattgggcgcaacaatttcaagctcattaaa
gagttcctgagcgctttaatttccccattcaatattgcccaagacaagataagagtaggg
ctgtcccagtacagcagcgatccccgcacagagtgggatctgagcgcttatgctacgagg
gaccaggtgctggaggcagtgaggaacctgcgctacaagggtggcaacaccttcacaggc
ctggcgctcacccatgtcctggaacaaaatctgaaaccagatgctggtgcccggctggaa
gctgagaaattggtaatcgtcctgactgatggaaaatcccaggatgatgccaacctggct
gctcagaccttgaaaaacatgggcatagagatatttgctattggggtgaagaacgcggat
gaggctgagctgaagcaggtggcttcagagccgctggagctcacagtgtacaacgtgctg
gacttccccctgctcagctccttggttggcaggctcacccgggtcctctgcagcaggatc
aaagagaggagcagcaaggagagtgcaggtagagctgtgaaagacatccctacaaatacg
ggtccacagctgagcccaacagaccttaaaatatcagctgtgacttctaaaagcatgcac
ttggcctggagtcctcctctgagtccaccaaagaaataccgggttgtgtacaacccatcg
aagggcggcactcccaaggaggtgcttctggatggagctgtctcctctctgtggctttcc
aacctgacctcgcacacagagtacctggtgtcagtgtttcccatttatgacgcagccgtt
ggggatgggctgagaggcgtcacctccacattgcctctgtctgccccccgctccctgcgt
gtctctgagctgagccacaacagcatcaagctgagctggaaggcagctcagggagccaca
cagtacctggtgctctgctctgcagcccccgatggagaagaggactattcgacagagatg
aaggtggctgagcccgaggtcctgctggacgggctgtcacccagcactgagtactccatt
gcagtgtatgcgttgtatggggaagatgccagtgatccagccagcatccaggaaaccacc
ttggccttgagccctcccaggtacctgagcttctcagagctcagccactcatccgtgcgg
gtcagctgggagccagcatcactggcagtgaaaggtcatcgtgtcacctacgtgtctagc
agagggagcaacactggggagattgaggttcttggcactgcagtgtccactgtcctgaga
ccactgtcctccctcacccagtacttcatcagtgtccgatctgtgtatgatgagggtgac
tcctttccaatcactggcaacgtcaccactttgaaggtccccccgccgcgggcgctgaag
gtttctgagctctctgagaacagcctccgtctgcactgggaagctgtcgctgcctccgat
gtggttgtctatcagatcaagtggagcacagctggtggagagaagcctcaggagctctcc
attgctggaaatgtggcaactgccatcctgcctggcttgcagaagaacacagactacaaa
atatccatctgggcctactacaaagatggtgctcgaagtgacacagtttccattcagcac
agaaccacttctcggagcccacccaccaacctcttcatagactctgagagccccaccagc
ctccagatccattggaagccacccgagggtcgcatacaacactacagaatcacctacagt
cctgtttctgatcccagcacccagcaaacaatcatggcttctgggaaaagcagcagtgtg
accttgcagccgctgctgcccgatcgagcctacaaggtggcagtttctgctgtccactac
acaggagagagcgagagcacaactgcaacgggtcggacggctcctgtgatgtctaaactg
ccttcaatacgaggatttgttccatctaagacagaagcctgtccccccatcagctcttct
gcaggctccgtacgaggattcgatatgatggaagcatttggcttagtagagaaggaatat
gcctccattaaaggagtggctatggagccattcgtatttagtggctcccgcaccttcacc
ctgttcagagacattcagctcaccctgaggaccagtgatgtccacctcttcaccatccca
cctgagcacaccatcagcatcctcctgcgcctcctgcccgacacccccaaggagcccttt
gctgtgtggcaaataaccgacgaggacttccagcccctccttggtgttaaccttgacccc
agtaagaaaaccttgacctatttcaatcatgactacaaggctgatttgcaggaagtctcc
tttgaccagcaggaagtgaagaagatattctatgggagctttcataaggtacaccttgca
gtgagccttttcaagatcaagctctatctggactgtaagaaaatagcagagagacccatc
aacaccattggcagcatctctaccgctggcttcatcatgctgggaaaggtgacacgaacc
agagggcccaggagtggatcagtgtcgttccagctgcagtcattgcaggttgtgtgcaac
agcttaggcgcagaggaggaccgatgttgtgatcttcctgcactgagggatgaggagagc
tgccccagcatagctcctgcctgctcctgcacttctggccgcccaggcttgccaggtcct
ccaggcccccctggcagccctgggaggagaggaccacaaggcgagcagggggagccaggc
cccaagggtgaaccaggcccacctggaaaagtgggaccagcaggtccgagtggccagcaa
ggctccccaggttcccaaggaatcacaattcagggccctgtggggccaccaggtattaaa
ggagagaaaggagacactggaagtcctggcatgcagggcattcctggtgtgcagggagct
ccaggcagagatggtcttcaaggtgcaaagggggtgaggggactggaaggcacagctggg
cccccaggacctcctggaccaaggggtttccaaggagtgacaggctcccggggcagcagt
ggagagaagggacctccaggtgacgttgggccaacaggactaccaggtccaaaaggagaa
agaggagagaaagtgagttttcctggtactgtacatcaagcacttgaaagattggatgtg
ggggaaccacagtccttggccacaatttaccagctggttagccaggcttgtgagcggatg
atccagagtcatgtgttgaaatttgattcattcattcatgaacatgcaaggaagccggtg
cctgtttgggaagaaagactgaagccaggagagccaggatcaccaggtcctccaggtcct
cctgggagcaatggagaaagaggagaaaatggcatccctggtcagacaggaaaagatggg
tatcctggagaaagaggtgccccaggacccaagggagaaaaaggaatggctggagtcaat
gaggaagggatccaaggacccagaggcagaacaggcccaccaggagaagttgtgctgggg
aaaccaggcccaaagggctaccctgggaacaccggtcctcaaggttttcctggtgtcaga
ggacagcctgggcagcccggatactcagggggctgtgatgtctctggatgttatgggcca
ggtagaagagatttcatcccttga
DBGET
integrated database retrieval system
