Phasianus colchicus (Ring-necked pheasant): 116227465
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Entry
116227465 CDS
T07365
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116227465 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcoc03041
]
116227465 (PRPF40A)
Spliceosome [BR:
pcoc03041
]
Complex A
U1 snRNP components
U1 related factors
116227465 (PRPF40A)
Complex B
116227465 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
116227465
NCBI-ProteinID:
XP_031446672
Ensembl:
ENSPCLG00000006126
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKGTRLAGRPDWP
AGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCGGGSLLSPSMRPGAVDRSSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFHPQTTHPVVCAAQQTATTNSSGS
EEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGK
PYYYNSQTKESRWAKPKELEDLEALIKAEENSTKTEESASATSAAADAASTASTATAAAE
AATAGAASTAAASETESTAASAVVENESAAAATAEDQGQQATSAPAAQEQSAESAANAAD
DSKQDGSADASKKEGDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMII
NDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRY
KKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMAN
VTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRE
RRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVSSSGSTALD
LFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDAGNIKL
AFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPA
FEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDS
HSKKKRQRSESRSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIEREKDKKER
ERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggggactcggcggcggcggcggccacggcctccccgcagccgctgccgttc
tccctgccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgtcccgtc
gcttcggccgccgaccaatcaccgaagggcacccggctggcgggccgccccgattggccg
gccggcaagccggtcagcctgctggccccgctgctcccgccccgcggggagcccgagccg
ctgatgcccttcggcccctcgtcgcggcagccactcagagggcgccttcttggcaggtgc
ggcgggggcagcttgctcagcccctccatgcggcccggcgccgtggaccgcagctctctt
atgatgggacacccagggatgccacattacccgcccatgggaatgcaccctatgggtcag
aggccaccaaacatgcccccagttccacatggcatgatgcctcagatgatgcccccaatg
ggaggaccaccaatggggcagatgcctggaatgatgcagtcagtcatgcctggaatgatg
atgtctcacatgtcccaagctgctatgcagcctacggttccgccaggggtgaacagcatg
gatgcgcaagtaggtgtgacacctcctggaactcagagctctgttttgtttcaccctcag
acaacacatcccgtggtttgtgcagctcagcaaacagccacgaccaacagttcaggcagt
gaggagcactctaaacagaaatcgacgtggacagaacacaaatcacctgatggaagaacc
tattactacaacactgaaacaaagcagtccacgtgggagaagccagatgatcttaaaaca
cctgctgagcaattgctgtctaagtgcccctggaaagagtacaaatctgattctggaaag
ccatactactataattcccaaactaaggagtcacgctgggcaaaacccaaagaactcgaa
gatctggaagcactgatcaaagctgaagaaaacagcaccaagactgaagaatctgcttca
gcaacttctgctgcagctgatgcagccagcacagcctccacagccacagctgctgctgag
gctgccacagctggtgctgccagcactgctgcagcctccgaaacagaaagcactgctgcc
tctgctgtggtagaaaacgagagtgctgctgcagccacagctgaggatcaggggcagcaa
gcaacttcagcacctgcagcacaggaacagagtgcagaaagtgctgctaacgcagccgat
gactccaagcaggatggttcagcagatgcttcaaagaaggagggtgatgatgcgcagcca
gttaaaaaaacctacacctggaatacaaaagaagaagcaaaacaggcatttaaagaactc
ctaaaagaaaagcgagtaccatccaatgcttcttgggagcaagccatgaagatgatcatt
aatgatcctagatacagtgctttggcaaagctgagtgaaaaaaagcaagcctttaatgct
tacaaagttcaaacagaaaaagaagaaaaagaagaagcaagatcaaaatacaaagaagct
aaagagtccttccagcgttttctggaaaaccatgagaagatgacatccacaacacgatac
aaaaaagctgaacaaatgtttggggagatggaggtctggaatgcaatatctgagcgcgat
cgcctggagatttacgaagatgtcttgttttttctgtctaagaaagagaaggaacaagcc
aaacagttacggaagagaaactgggaagctctgaagaacatccttgataacatggctaat
gtcacttactgcactacttggtcagaggctcagcagtacctgatggacaaccctacgttt
gcagaagatgaggaacttcagaatatggataaggaggatgcactgatctgctttgaggaa
cacatcagggcattggaaaaggaggaggaagaagaaaaacagaaaagtttactgagagaa
agaaggcggcagaggaaaaacagagaatcttttcagatatttttagatgagctgcacgag
cacggacagttacattcaatgtcctcttggatggagttgtacccaaccataagctctgac
atcagattcactaatatgcttggccagcctgtttcttcatcaggatcaacagcacttgac
ctcttcaagttctatgttgaagacttaaaagcacgttaccatgatgaaaagaagataata
aaagatatcttaaaggacaaaggatttgtagttgaagtgaatacttcttttgaagacttt
gttacagtcatcagttcaactaagagagccaccactttagatgcaggaaatatcaagctg
gctttcaatagtctgctggaaaaggcagaagcccgtgaaagagaaagggaaaaagaagaa
gctcgcaaaatgaagcggaaagagtctgccttcaagagtatgctgaaacaggctactcct
cccattgagctggatgctgtctgggaagatatcagagacaggtttgtgaaggaaccagca
tttgaagatatcactctggagtctgaaaggaaaagaatatttaaagatttcatgcatgta
cttgagcacgagtgtcagcatcatcattcaaagaacaagaaacattctaagaaatccaaa
aagcaccacaggaagaggtctcgctctcgctcgggctcagagtctgaggatgatgatagc
cattcaaagaagaaaaggcaacgttcagaatctagatctgcttctgagcgttcttccagt
gcagaatctgagagaagttacaagaaatcaaaaaaacacaagaaaaagagcaagaaaaga
agacataagtctgattcaccagaatctgatattgaacgagaaaaagacaaaaaagaaaga
gagagagaaagtgaaaaggatagagctagacaaagatctgaatcaaaacataaatctccg
actaaaaaacgacctggaaaagattctggcaactgggacacctcgggcagcgagctgagc
gaaggggagttggaaaagcagaggcggactcttttggaacaactggatgaagatcaatga
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