Phasianus colchicus (Ring-necked pheasant): 116228084
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Entry
116228084 CDS
T07365
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03030
DNA replication
pcoc03420
Nucleotide excision repair
pcoc03430
Mismatch repair
pcoc03440
Homologous recombination
pcoc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116228084 (RPA1)
03420 Nucleotide excision repair
116228084 (RPA1)
03430 Mismatch repair
116228084 (RPA1)
03440 Homologous recombination
116228084 (RPA1)
03460 Fanconi anemia pathway
116228084 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcoc03000
]
116228084 (RPA1)
03032 DNA replication proteins [BR:
pcoc03032
]
116228084 (RPA1)
03400 DNA repair and recombination proteins [BR:
pcoc03400
]
116228084 (RPA1)
Transcription factors [BR:
pcoc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116228084 (RPA1)
DNA replication proteins [BR:
pcoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116228084 (RPA1)
DNA repair and recombination proteins [BR:
pcoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116228084 (RPA1)
MMR (mismatch excision repair)
116228084 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
116228084 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
116228084
NCBI-ProteinID:
XP_031447575
Ensembl:
ENSPCLG00000003587
UniProt:
A0A669P9X1
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MSGRLSEGAIAAIMQGENVCKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNPLVEEERLSAHCICQVNRFIVNSLKDGRRVVILMDLDVLKTADMVGGTVGNPVPYNEG
QGQQRSSAPTANTAPNKPQQPNGNLSVAGSAAPKYHAPSNQFSKASAPSSVKTPGGTQSK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFV
SISDLENTPKDSIVDVIGICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGN
EAEKFDGSRQPVIAIKGARVSDFGGRSLSVMSSSTVVVNPDSPEAFKLRGWFDSEGQLLE
CASISDVRGGSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQS
ATFLGELKEKNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATAMDVKPVNYREYS
KRLIASIRRNAQLG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcggctgagcgaaggcgccatcgcggctataatgcagggagagaacgtctgc
aagcccgtgctgcaagttattaacacacgggctattgccacaggaaatgggcctcctcgg
taccgagtgctgatgagtgatggggtgaacacgctctcctcattcatgctggcgacacag
ctgaacccccttgtggaagaggaacgtttatcagcacactgtatttgccaggttaacaga
ttcattgtcaacagcttgaaagatggaaggagagtggttatactgatggatttagatgtc
ctgaaaactgctgatatggttggtgggactgttggcaacccagtgccttacaacgaaggg
cagggacagcaacgttcttcagctccaacagccaacacagcacccaacaaaccacagcaa
ccgaatggcaatttgtcagtagcaggttctgctgctccaaagtaccacgctccctcaaac
cagtttagtaaagccagtgctcccagctcagtgaagacaccagggggaacgcagtccaaa
gtagtgcccattgccagcttgaatccataccaatctaagtggaccatttgtgctcgtgtt
acccaaaaagggcagatccgcacatggagcaactcccgtggtgaggggaagctcttctct
atagagctggttgatgagagtggtgagattagagctacagcattcaatgatcaagcagac
aagttctttcctctcattgaactgaacaaggtatattattttaccaaaggcaatttgaag
actgctaacaagcagtatacagctgttaagaatgattatgagattacattcactaatgag
acttcagttgtgccctgtgacgatgcccagcatcttccatctgttcagtttgattttgta
tccatctctgacttggagaacacacccaaagactcaattgtcgatgtaattggaatttgt
aagagctatgaagatgtcactaaaattgtagtgaaagctagcaatagggaggtatcgaag
aggaatgtgcatctgatggatacatcagggaaactggtgacagctacgctgtggggaaat
gaggctgagaagtttgatggttccagacaacctgtgatagccatcaaaggagcacgggtc
tctgattttggtggtagaagcctgtctgtcatgtcatcgagtacagtggttgtcaaccct
gatagcccagaggctttcaagctccgaggatggtttgactctgagggacagcttctggaa
tgtgcctccatctctgatgtgagaggtgggtcggcgtcgggggtgaataccaactggaaa
actttgtatgaagccaaatcagagaggttgggacagggagataaggcggattattttagc
tgtgtgggcacaatagtacatctgcgcaaagagaactgcatgtaccaggcctgtccctct
caggattgcaataagaaagtgatagaccaacagaatggactgtatcgttgtgagaagtgc
gatcgtgagttccccaacttcaagtaccgcatgatgctgctggtgaccattgcagactct
ctagattaccaatgggtgacttgcttccaagagtcagcagaattcattcttgggcaaagt
gctactttcctgggagagctgaaggaaaagaacgagcaggcgtttgaagaagtctttcaa
aatgcaaatttcaacacgtatgagttcaagatcagagtaaagctggagacgtacaatgat
gaatctcgtattaaggctacagcaatggacgtcaaacctgtaaactacagagaatacagc
aagaggttgatcgcgagcatcaggagaaatgctcagctaggatga
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integrated database retrieval system
