Phasianus colchicus (Ring-necked pheasant): 116228132
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Entry
116228132 CDS
T07365
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116228132 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcoc03400
]
116228132 (LIG3)
Enzymes [BR:
pcoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116228132 (LIG3)
DNA repair and recombination proteins [BR:
pcoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
116228132 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
116228132
NCBI-ProteinID:
XP_031447649
Ensembl:
ENSPCLG00000003922
UniProt:
A0A669PDV3
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MLLRHFRAAGRGGGPPCCAHASCSTVAWRRRRRPEAGWMPAGSAALTRAARALGLGCPRA
LLSWPRLWSRCAALPGSRCRLSVSAAACCVHVKPGGVAARLLVPLPVHTWLCRACTAAGD
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCMFEKL
EKARATTKKIEDITDLEGWEELQDGEKELITNLISEATSKAASTPKKKATVQAKLTATGQ
ISSPQKDPLANINPKKFSGFTAKPKNSEEVSANSSHNSSLSAKNCDPKHKDCLLREFRKL
CAMVADKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTIKLLLPGIIKIVYNLNDKQIVKL
FSRIFNCSQEEMVRDLEQGDVSETIRLFFEQSKSCPPAAKSLLTIQEVDEFLIQLSKLTK
EDDQQSVLQDITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQD
VVERVLRNQQDAEKTPGVKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKY
DGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGHSMILDSEVLLIDNKTG
KPLPFGSLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLRERRKFLHDNMVEIPNRIL
FSEMKHVTKASDLADMITRVIREGLEGLVLKDIKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGKGSKGGMMSIFLMGCYDPKSEKWCTVTKCAGGHDDATLARLQTELDMVK
ISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWKTATNLPQLKELYQLSKEKAEFSVVAGEEEESTAGSSGENEGNSRSSTPHKIT
KTPPNKSPAKAKKPEGTKAVTESPQKPEEKRGEKRKASEMEDNGKKLLLDIFTGVKLYLS
PSVKDFNKIRRYFIAYDGDLVSEYDTASATHVIGDMDENPGAKRVSPKWIWECIRKRRLV
APC
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgctcttacgtcacttccgggctgccggaagagggggcgggccgccgtgctgtgcgcat
gcgtcctgttctacggtggcctggaggaggcggcggcggcccgaggcgggctggatgccc
gcgggcagcgcggcgctcactcgggctgctcgggcgctcgggctcggctgtcccagggcg
ctgctctcctggccgaggctctggtcgcgctgcgctgccctgcccggctcccgctgccgg
ctgtcggtgagtgcggctgcctgctgtgtgcacgtgaagccaggcggcgttgctgcgcgt
ctcctcgtccctctgcctgtgcacacgtggctgtgccgggcctgcacggcggcgggggac
atggctgaacagaggtactgcgtggattacgccaagcgtggcacggccggctgcaaaaag
tgcaaggagaagatcgtgaaggggatggtgcgcatcgggaagatcgttcccaaccctttc
acggagtctggcggggatatgaaggagtggtaccacgtcaagtgcatgtttgagaagctg
gagaaggcccgggcaaccaccaagaaaatagaagacatcacggatttggaagggtgggaa
gagctgcaggatggggagaaggaactgattaccaaccttatctcagaagctacatccaag
gctgcaagtacaccgaagaaaaaagcaacagttcaggctaagctcactgctactggacaa
ataagcagtccccagaaagatccattggctaacatcaatccaaagaagttctctggcttc
acagccaaacccaagaattctgaagaggtgtctgcaaactcttcccacaactccagcctg
tctgcaaagaattgtgatccgaagcacaaagactgcttgctgcgagagttcaggaagctc
tgtgccatggttgctgacaagcctagttacaacgtgaaaacacagatcatccaggacttc
ctgaagaagggaagtggaggagatggttttcatggtgatgtatacctgaccattaagcta
ctcttaccaggcatcattaaaattgtttacaacttgaatgataagcagattgtaaagctg
ttcagtagaatttttaactgcagccaagaagaaatggtccgggacctagaacagggagac
gtttctgagacaatacgcctcttctttgagcagagcaaatcttgtcctccagcagccaaa
agcctcctgaccatccaagaggtagatgagtttctcatccagctatctaagcttactaag
gaagatgaccagcaaagtgtgctgcaagacatcactcgcagatgtacaggcaacgacctg
aaatgcatcatcaggctaattaagcatgacttgaaaatgaacgctggcgcaaagcatgtg
ttggatgctttggatcccaatgcttacgaggcattcaaagcatcacgcaacctccaggat
gtggtggagcgagtcctgaggaaccagcaggatgctgagaagacgccaggtgtgaagcga
acgctcagcgtgcaggcatctctgatgactccagttcagcctatgctggctgaagcctgc
aagtcaatagagtatgccatgaagaagtgtcccaatggcatgtatgcagagattaaatat
gatggtgagagagtgcaggtccataaaaacggagatcacttcagctacttcagccggagc
ctcaaacctgtccttcctcacaaagtagcccactttaaggacttcatcccccaggctttc
cctggtgggcacagtatgatcctggattcagaagttcttctaattgataataagactggc
aagccacttccttttggatctcttggtgtacataagaaagctgctttccaagatgccaac
gtttgcttgtttgtgtttgactgcatctatttcaacgacatcagcctgatggacaggcct
ctgcgtgagcgtcgtaaatttctacatgacaacatggttgaaatccccaaccggatcctg
ttctcagagatgaagcacgtcacaaaagcttcagatctggcagatatgatcacccgggtc
atccgtgagggactggaaggactggtgttgaaagatataaagggtaattatgaaccagga
aagcggcactggctgaaagtgaaaaaggattacctaaatgagggtgcaatggctgacaca
gcagacttggtggtgctgggagctttctatgggaaaggcagtaaaggtgggatgatgtcc
atcttcctcatgggctgctatgaccccaagagcgagaagtggtgcactgtgaccaagtgt
gctggtggccatgatgatgccaccttggcccgtttgcaaacagagctggatatggtgaag
atcagcaaggatcctagtaaaattccaagctggctgaaaataaataaaatctactaccca
gacttcattgtcccagatccaaagaaagctccagtgtgggagattacaggggctgagttc
tccaaagctgaagcccacactgcagatgggatctccattcgcttccctcgctgcactcgc
attcgagatgacaaagactggaagacagccaccaacctcccgcagctgaaggagctgtac
caactctccaaagaaaaggctgagttcagtgttgttgctggggaggaggaggagtccaca
gctggcagcagtggagagaacgagggaaattccaggtcttccacaccacacaagattact
aaaactccccctaacaagtcccctgctaaagccaagaaaccagaaggcaccaaagcagtc
actgaatcccctcagaagccagaggagaaacgaggagagaagcgaaaagcatctgagatg
gaagacaatggaaagaagctgctgctggacatattcactggtgtgaagctctacttgtca
ccctctgtgaaggacttcaacaaaatccgacgctacttcatagcatatgatggtgatctc
gtgtcagagtatgacacagcctcagcaacacatgttattggggacatggatgagaatcct
ggtgctaagcgggtgtctcccaagtggatctgggaatgcatccggaaacggagactggtg
gccccatgctag
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