Phasianus colchicus (Ring-necked pheasant): 116230143
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Entry
116230143 CDS
T07365
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116230143 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcoc03041
]
116230143 (SNRNP40)
Spliceosome [BR:
pcoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116230143 (SNRNP40)
Complex C
U5 SnRNP specific factors
116230143 (SNRNP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
WDR54
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
116230143
NCBI-ProteinID:
XP_031450952
Ensembl:
ENSPCLG00000006885
UniProt:
A0A669PJI9
LinkDB
All DBs
Position
Unknown
AA seq
389 aa
AA seq
DB search
MIEQQKRKAPGGPVPGPGPGPAPGPGPGPAPGAAPGPTPGPDLPLVPSAAKRPRHDPPAA
GGGGGGGGGQPPAGALLQSGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDR
LILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLK
GHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQI
ISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFA
PKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAG
SVNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagcagaagcgaaaggccccgggcggccccgtcccgggcccaggtcccggc
ccagctcccggtcccggccccggccccgcgcctggcgctgcccccggccccacgccgggt
cccgatctccccctcgtgccctcggcggccaagcggccccgccatgacccaccggcggct
ggcggagggggcggagggggtggcgggcagcccccagccggtgctctgctacaatcgggc
cccccgcgctgctcctcgctgcaggcgcccatcatgttgctgtcggggcacgagggagag
gtgtactgctgcaagttccaccccaacggcaacaccctggcgtctgccggctttgacagg
ctgatcctgctatggaatgtctatggggactgtgataactacgccaccctgaagggacac
agcggggcagtcatggagctgcactataacacggatggcagcatgctcttctcagcatcc
acagacaagactgtggctgtgtgggacagtgagactggagagagagtgaagaggctgaag
ggccatacctcatttgtgaactcctgctacccagcaagacgaggacctcaacttgtctgt
acaggcagtgatgatgggacagtgaagctgtgggatatcagaaaaaaagctgctgtccag
acatttcagaacacttaccaggtcttggctgtaactttcaatgacaccagtgatcagatc
atatctggaggcattgacaatgatattaaggtgtgggaccttcgccagaacaagctcaca
tacaccatgagaggacatgcagactcagtgacgggcctcagtctgagttcagaaggctct
tacctgctctctaacgcaatggataacacagttcgcatctgggatgtgcgaccgtttgcc
ccaaaagagagatgtgtaaagattttccaggggaacgtgcataattttgaaaagaatctt
ttgaggtgctcctggtctccagatgggagtaagatagcagggggatctgctgacaggttt
gtctatgtgtgggacaccacatccaggaggattttgtacaagctgccaggccacgcaggg
tcggtgaatgagctggctttccatccagaggaacctattatactctctgcatccagtgac
aagaggctgtatatgggggagatccagtga
DBGET
integrated database retrieval system
