Phasianus colchicus (Ring-necked pheasant): 116230664
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Entry
116230664 CDS
T07365
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116230664 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcoc04121
]
116230664 (TRIM54)
Ubiquitin system [BR:
pcoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116230664 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-RING_6
Sina_RING
CYP38_PsbQ-like
Prok-RING_4
DUF5799
RHH_9
CagA
FlgN
Motif
Other DBs
NCBI-GeneID:
116230664
NCBI-ProteinID:
XP_031451829
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSGAGPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQQLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICRTIEENGRRQKQHVGLRFDSLCSILEERKKELLQSVTREQE
AKVQRVRGLIRQYGDHLEASSKLVETAIQAMEEPQMAVYLQHSKELLKKITDMSKVSMSS
RPEPGYESMDHFSINVDHVAEMLRTIDFQPEALGEDDGDGPTDSSEGVGDEESLEAPEAA
EGECVLCCAMLCCAKVTMVLLWLQCGPVWCMVSHRTMCPFLCLSTAFSPQMWGKDRSH
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaagcgcgcagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttcaccaagcctgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtcgcggggttccggcgcggggccgtccggggggcggttccggtgcccgtcg
tgtcgccacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtccgcgcgccccctgcacgcgaaggcg
gagcaacagctgatgtgcgaggagcacgaggacgagcgcatcaacatctactgcctgcgc
tgtgaggcgcccacctgctcgctctgcaaggtgttcggcgctcacaaggactgcgaggtc
gcccctctgcccgccgtgtaccagcgccagaagagcgagttgagcgacggcatcgccatg
ctggtggcagggaacgaccgcatccaggccatcatcacgcagatggaggagatctgccgc
accatcgaggagaacggccgccggcagaagcagcacgtggggctgcgcttcgactcgctc
tgcagcatcctggaggagcgcaagaaggagctgctgcagagcgtcacccgcgagcaggag
gcgaaggtgcaacgcgtgcgcggcctcatccggcagtacggggaccacctggaggcctcc
tccaagctggtggagacggccatccaggccatggaggagcctcagatggccgtgtacctg
cagcactccaaggagctcctgaagaagatcacagacatgtccaaggtgtcgatgagcagc
cgccctgagcctggttatgagagcatggaccacttctccatcaatgtggaccacgtggct
gagatgctgcgcaccatcgactttcagccagaagcactgggtgaggatgatggggacgga
cccacggacagcagtgagggtgtgggggatgaggagagcctggaggcacctgaggctgct
gagggtgagtgtgtgctgtgctgtgccatgctatgctgtgctaaagtcaccatggtgctt
ctgtggttgcagtgtggccctgtatggtgcatggtctcacaccgcaccatgtgtcccttc
ctctgtctgtccactgctttttctccacagatgtggggcaaagacagaagccattga
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