Phasianus colchicus (Ring-necked pheasant): 116230911
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Entry
116230911 CDS
T07365
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc04382
Cornified envelope formation
pcoc04510
Focal adhesion
pcoc04512
ECM-receptor interaction
pcoc04518
Integrin signaling
pcoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116230911 (COL4A4)
04518 Integrin signaling
116230911 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116230911 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116230911 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116230911 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcoc04147
]
116230911 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
pcoc00536
]
116230911 (COL4A4)
Exosome [BR:
pcoc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116230911 (COL4A4)
Glycosaminoglycan binding proteins [BR:
pcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116230911 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116230911
NCBI-ProteinID:
XP_031452213
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLIRTAWWLLIVFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSIGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKHGVDGCNGSRGDPGFPGENGYIGPRGPYGNPGQKGEKGNSVYVSYFGKGPP
GDRGDPGPRGMPGPRGSTGTTGPPGYPGQPGMPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGIPGYRGPRGPKGVPGKGEKGEKGIPGF
PGLRGSPGSDGPAGFPGIKGEMGVAGFPGRPGYPGIKGDLGEKGPPGPPGAIGTPLLPVK
GPPGDPGFPGPAGDMGSVGPSGPVGLLGRPGDDGTSLPGLPGISGAPGPQGFQGDPGSPG
TGEAIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTERGIPGEPGAKGQIGLPGRKGEKGE
KGNQGLCSCTAGPPGPRGIQGPPGTHGKKGQMGYPGRHGEKGDSGFSGAVGSPGLPGTPG
PGGQHGEKGEKGDQGRVSIKGIKGERGPTGVPGFPGQKGNDGRDGDLGLPGEKGAEGDSG
VPVPGDKGFPGVPGLPGVRGPMGLPGLGFPGPPGVRGTPGDFGDDGNIGLPGPKGQKGDT
VCITSPYPGNPGPPGFKGVQGPKGLKGLPGLPGRSGFDGPKGQQGRPGAGIPGPEGFRGT
AGDPGEEGERGPTIDGKNGAPGPPGIDGQKGVPGDTTYGPPGIPGNRGLPGPPGAQGARG
DPGIPGLQGHPGTPGFPGAKGFRGPEGDTGAPGCPGTPGPPCDTRLPGPPGLRGVIGLPG
SQGLPGYKGQKGDRGLAGPPGTKGLKGSPGSQGPPGPPGSRGIPGLPGNKGQPGFPGQTG
SKGIQGPQGFPGLPGTQGPMGISGVKGEEGNMGPPGPSGECGDMGMKGERGLPGDGGSIN
IRLEKGQKGEPGFPGENGFRGERGEKGNTGFRGAPGFPGHSGAPGLPGDHGDIGLMGFPG
SRGFPGPKGSKGITGFKGLPGDQGDAGLPGMPGNPGMTGPKGPKGKRGDPTLLLGTQGRK
GSPGDLGLPGFCGFPGEKGSPGIQGQPGRPGSKGEPGYPGIPGFPGATGPPGLPGEPGEK
GKHGILGPPGLQGLTGSQGRKGLPGLPGLDGLHGLKGQKGSAGAPGQSETGRPGYSGEPG
PKGERGEPGWPGISIPGTPGERGFPGFPGRRGPVGPIGPRGPSPSSAPPGLPGDQGPPGL
DGIRGQPGNPGPPGETVFVRGDPGDIGIQGAPGIPGHRGLQGARGLPGNQGREGPKGPMG
IHGSRGPPGAVGQPGDQGFQGKPGPKGPTGFIGDPGEPGKTDDSCPAIPGPPGEAGHRGD
DGSVGLPGPIGHPGPQGRKGEEGSCGLPGQDGLPGAPGPPGDQGHVGEQGYAGPQGPPGQ
TGIPGPPGPHIRSSSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMTPLSEEEIQPYISRCAVC
EAPAQAVAVHSQDQSIPPCPMNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPDLQFASAPLSGTLKEGQEQRKKISRCQVCLKH
D
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaacaaaggattcatttgaacgaattaagtggcttatcagaactgcctggtgg
ctgctgatcgttttttcagcacaagaaattgatgggggaggatatgcatatattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccggaaaaaggatcaagaggtcaa
cctggtgagctgggagctcaaggaccaattggatccttgggatctataggaccagctggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaagcacggtgtagatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggatatattggaccaagaggtccttatggaaaccca
gggcaaaaaggagaaaaaggaaattcagtgtatgtttcgtattttggaaaaggaccccca
ggagacagaggtgatcctggcccccgtggtatgcctggacctagaggatcgacaggtaca
acaggcccacctggatacccaggccaaccaggcatgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaaaggagagccgggt
gatgttggacttcccggaccacctgggtcaccactgttagttggacctcctggagctcag
ctgttcaaaggagaaaagggccaaaaaggactacctgggataccaggatacagggggcca
cgtggacctaaaggagtacctggtaaaggagaaaagggtgaaaaaggcattcctggattc
cctggattgcggggtagccctggttctgacggacctgcaggctttcctggaataaaggga
gaaatgggtgttgctggttttcctgggagacctggatatccaggcatcaagggggatctt
ggagaaaaagggcccccaggtcctcctggagctattggaactccactgcttcctgtgaaa
ggcccaccaggagatcctggatttccaggtcctgcgggtgacatggggtcagttggacct
tctggccctgtgggtctgctaggaagaccaggagatgatggaacaagtctgcctggcctg
ccaggaataagtggggcaccaggacctcaaggttttcaaggtgaccctggttcacctgga
acaggtgaagcaattccaggaagacctggatttcctggaccacctggactaccaggacag
ccaggaagacaaggcttacctggactacctagtgtaatttgtactgagagagggattcct
ggagaacctggagcaaaaggtcagataggccttccaggtagaaaaggtgaaaaaggagaa
aaaggaaatcaaggcctctgctcatgtactgctggtcctcctggtccccgtggtatacaa
ggacctccaggtactcatgggaagaaaggacaaatgggttaccctggaagacatggagaa
aagggtgattcaggcttttctggtgcagtgggatcaccagggctccctgggacacctggt
cctgggggacaacatggtgaaaaaggagagaagggtgaccaaggaagagtttcaataaaa
ggaataaaaggtgaaagaggtcctactggggttccaggatttccaggccaaaaaggtaat
gatggcagagatggggatttaggattgcctggggaaaaaggagctgagggtgattctgga
gtaccagtaccaggtgataaaggatttcctggagttccaggactccccggagtaagagga
ccaatgggattgcctggtttggggtttcctggccctccaggagtcagaggtacccctgga
gactttggtgatgatggtaacattgggctgcctggtccaaagggtcagaaaggtgacact
gtgtgtataacatcaccataccctggaaacccaggtcccccaggttttaaaggtgttcaa
gggccaaagggtttaaaaggactccctggtcttcctggacgaagtggctttgatgggcca
aaaggccagcaaggcaggccaggagcaggaatccctggaccagaaggctttcgaggcaca
gctggtgatcctggtgaagaaggtgaaagaggacctaccattgatggtaaaaatggtgct
ccaggtccacctggcatagatggccagaagggtgttccaggtgatactacatatggccct
ccaggaatcccaggcaacaggggactgccaggacctcctggtgcacaaggagcaaggggt
gatccaggcattcctgggcttcaagggcaccctgggaccccaggatttccaggtgctaaa
ggttttaggggcccagaaggtgatacaggagcaccaggctgtccaggcacccctggtcca
ccatgtgacacaagattaccagggccacctggactcagaggtgtcataggcctgccaggt
tctcaaggcttaccaggctataaaggtcagaagggagacaggggcctagctggaccacct
ggaaccaaaggtctgaagggctctcctggctcacagggccccccaggtcctccagggtcc
cgaggcattccaggacttccaggcaataaaggacagcctggcttcccaggtcaaacagga
agcaaagggattcaaggaccccaaggattccctggactcccaggaacacaaggcccaatg
ggaatctctggtgtaaaaggggaagaaggaaacatgggtccacctgggcctagtggagaa
tgtggggatatgggaatgaaaggtgaaagagggcttccaggagatggtggcagcattaac
attcggcttgagaaaggacaaaagggggaaccagggtttcctggtgaaaatggatttaga
ggtgaaagaggtgaaaaaggaaatacaggtttcagaggtgccccaggatttccagggcac
agcggtgccccaggacttccaggtgaccatggtgacattggactgatgggatttccagga
tcccgtggtttcccaggaccgaagggctctaaaggaattacaggtttcaaaggactacca
ggtgaccagggtgatgctggcttaccaggaatgcctggaaacccaggaatgacaggcccc
aaaggacctaaaggaaagagaggtgacccaactcttctgcttggtacacaaggtcgaaaa
gggtctcctggagatctaggattaccaggattctgtggattcccaggtgagaaaggttca
ccaggtatccaaggacaacctggaagaccaggatccaagggcgagcctggatacccagga
atacctggatttccaggagctacaggtcctccaggattgccaggagaacctggagaaaaa
gggaaacatgggattttgggacctccagggctgcaaggattaactgggtcacaaggtaga
aaaggtcttcctggactgcctggactggatggcttgcatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacctgga
ccaaaaggagagagaggtgaacctggatggcctggtatttccattccaggcacccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgttggacccattggacctagg
ggaccatctcccagtagcgctcctcctggtcttccaggtgatcaaggaccacctggttta
gatggcatcagaggtcagcctgggaatcctggtcctcctggagagactgtctttgtgcga
ggagatccaggtgacatcggtattcaaggggcaccaggcattcctgggcaccgagggcta
caaggagccagaggtcttccaggaaatcaaggaagagaaggtccaaagggtccaatggga
atccatggctcgcggggtccacctggtgctgtaggacaaccaggagaccaaggttttcaa
ggaaaacctggtcctaaaggtcccacggggttcataggtgatcctggtgaaccaggaaaa
acggatgactcgtgtcctgcaatcccagggcctcctggggaagcaggacatagaggagat
gatggttcagttggattaccagggccaataggtcaccctggaccccaaggaaggaaaggt
gaagaagggtcatgtggcctgccaggtcaagatggcttaccaggagcacctggaccacca
ggtgaccaagggcatgtgggagagcaaggatacgctggaccacaaggtccacctggccag
actggtatcccaggaccaccagggccccatattagatcttcaagtggattcttgctcgtc
cttcatagtcagtcagacagagaaccactttgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagaaaaagctcataaccaagatcttggtctg
gcaggatcttgtcttcctgtgtttaataccatgccttttgcttactgtaacatcaaccaa
gtttgttactacgccagccgaaacgataagtcctactggttgtcaagtgctgctcccttg
ccaatgacaccactttctgaagaagaaatacaaccatacataagcagatgtgctgtatgt
gaggctccagctcaagcagtagcagttcacagccaagatcagtcaattcctccctgccca
atgaactggagaagtctttggataggatattcttttctgatgcacactggatctggtgat
cagggaggtgggcagtcccttatgtcaccaggaagctgcttagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacttgtcagttttttgctaatgaatacagc
ttctggctaacaacagtgatgcctgacttgcagtttgcatcagctcctttgtcaggaact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgtcaggtatgcctgaagcat
gattaa
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integrated database retrieval system
