Phasianus colchicus (Ring-necked pheasant): 116233951
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Entry
116233951 CDS
T07365
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116233951 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcoc03041
]
116233951 (SF3B1)
03036 Chromosome and associated proteins [BR:
pcoc03036
]
116233951 (SF3B1)
Spliceosome [BR:
pcoc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116233951 (SF3B1)
Complex B
116233951 (SF3B1)
Complex C
U2 SnRNP specific factors
116233951 (SF3B1)
Chromosome and associated proteins [BR:
pcoc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116233951 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
116233951
NCBI-ProteinID:
XP_031457019
Ensembl:
ENSPCLG00000009312
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcgcagatccgagaaattcaaggc
aaaaagcctgcccttgatgaagcacaaggagtaggcctcgactccaccgggtattatgat
caagaaatttatggtggcagtgacagcaggtttgcaggatacgtaacatccattgcagca
actgaattggaagacgatgatgatgattacccatctacaagtttgcttggccagaagaag
ccggggtaccatgctccagtggcactgcttaatgacataccacagtcaaccgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaggaagagagggagattaggcaacagctagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcatctcagccaccttcaaaacgcaagcggcgttgggatcaa
acagcagatcagactcctggtgcaacacccaaaaagttatccagttgggatcaagcagag
actcctggacatacaccatctctgcgatgggatgaaactccaggccgtgcaaagggtagc
gaaactcccggtgccacccctggctcaaagatatgggatcccactcccagtcacacgcca
gcaggagctgcgacacctggacgggacacacctggtcatgcaacaccaggccatggagga
gccacttccagtgcacgtaaaaatcgatgggatgaaactcctaaaacagaaagagatact
ccgggacatggcagtggatgggctgagactcctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcaagtaaaagaaagtcccgatgggatgaaacacctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactcctactccaggtcatataatgagcatgactcctgaacagctg
caggcttggcgttgggagagggaaattgatgagagaaacaggccgctttctgatgaagaa
ttagatgctatgttcccagaaggatataaggtccttcccccaccagctggttatgtacct
attcgtactccagcacgtaaacttacagcaactcccacaccattgggtggtatgactgga
ttccacatgcagacagaggaccggactatgaagagtgtcaatgaccagccttctggcaat
cttccattcctaaagccagatgatatccagtacttcgataagctgctggttgatgttgat
gaatcgactcttagtcctgaagagcagaaggagaggaagataatgaaattacttttgaaa
ataaagaatggcacgcctcccatgagaaaggctgccttgagacaaattactgataaagct
cgggaatttggagctggtccattgtttaatcagattctaccattgctgatgtcaccaaca
ctggaggatcaggagcgccacttacttgtcaaagtcatagacagaattctgtacaaactg
gatgacctggtccgaccatacgtacataagattcttgttgtcattgaaccattgctgatt
gatgaagactattatgccagagtagaaggcagagaaattatttcaaacttggctaaggct
gctggtttggcaacaatgatttctacgatgcgacctgatattgataacatggatgaatat
gtccggaataccacagctcgagcctttgctgttgttgcctctgctttgggcattccttct
ctgttgcccttcttgaaagctgtctgtaaaagtaaaaaatcctggcaagcgaggcatact
ggcatcaagattgtgcagcaaattgctattcttatgggttgtgctatcttgcctcatctc
aggagcttggttgaaattattgaacatggtcttgtggatgagcagcagaaggttcgtacc
atcagtgctttggctattgctgctttagctgaggcagctactccctatggtattgagtca
tttgattctgttctgaagcccttatggaagggtatacgtcaacacagaggaaagggtttg
gctgccttcttgaaagctattggttatctgattccactcatggatgctgagtatgcaaac
tattataccagagaagtcatgctaattctgatcagagagttccagtctcctgatgaagag
atgaaaaaaattgttttgaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagagatcttgccaccttttttcaaacacttctggcagcacagaatg
gctttggacaggaggaattacagacagttggtggatacgacagtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggccgaacag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggtgcggcagac
attgatcataagctggaagagcaacttattgatggcatcttgtatgcctttcaagaacag
accacagaggattctgtgatgctgaatggctttggcacagtggttaatgctcttggcaaa
cgagtgaagccctacttgccgcagatctgcggtacggttctgtggcgtttgaacaacaag
tcggccaaggtgcggcagcaggctgctgacctcatctctcgtactgcagtggtcatgaag
acttgtcaagaggaaaaactgatgggacatctgggtgttgtgttatatgagtacctgggt
gaagaatatccggaagtactgggcagcatacttggagcacttaaggctattgttaatgtc
ataggtatgcacaagatgacaccacctatcaaagatctgctgccacggctcacgcctatt
ttgaagaacagacatgagaaagtacaggagaattgtatcgatctggttgggcgcattgct
gacagaggtgcagaatacgtttctgcaagagaatggatgaggatctgctttgagctgctt
gagttattaaaagctcacaagaaagctattcgaagagccacagtaaatacttttggatat
attgcaaaagccattggacctcacgatgtcttggctacattgctgaataacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcgcctttcacagtgctgcctgcgctcatgaatgaatacagagtcccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgttcgaatacattggagaaatgggaaaa
gattatatttatgctgttacgccattgctcgaagatgctttaatggacagagatcttgta
cacagacaaacagccagtgctgtggtgcaacacatgtctcttggtgtttatgggtttggc
tgtgaagattctcttaatcatttgttaaactacgtatggcctaatgtgtttgaaacctct
ccgcacgtcattcaggcagtcatgggggctctggagggcctcagagttgctattggccct
tgccgaatgttgcagtattgtttgcagggtttgtttcatcctgcccggaaagtcagagac
gtttactggaagatttataattccatctacattggctcacaggatgctctgatagcacac
tatccaagaatctataacgatgaaaagaacacctatattcgttatgaacttgactacatc
ttataa
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integrated database retrieval system
