Phasianus colchicus (Ring-necked pheasant): 116234271
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Entry
116234271 CDS
T07365
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoc03021
]
116234271 (SETX)
Enzymes [BR:
pcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116234271 (SETX)
5.6.2.5 RNA 5'-3' helicase
116234271 (SETX)
Transcription machinery [BR:
pcoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116234271 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
RNA_helicase
NAT10_TcmA_helicase
TniB
Lysis_col
Motif
Other DBs
NCBI-GeneID:
116234271
NCBI-ProteinID:
XP_031457623
Ensembl:
ENSPCLG00000013139
UniProt:
A0A669QPW8
LinkDB
All DBs
Position
Unknown
AA seq
2803 aa
AA seq
DB search
MNVCRWCTPSGLDATEYLKSYASKQLSPEDLEASNDDLCYCLECVVEYHKAREKVPSLHQ
VLLELETSRLIAHIEKSIREEAGEDDELFIVDENGETQLPVYVGPDFENNLRVPLLEVLK
YPYLLLHEKVSELCVEVLCRMEESHTSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYRSSVIEKGKLILLPSHLYDNTNYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEADDDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRNSLIRTKSEQKTDYNDEMVTCSQIVYT
YNTEKPQKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGRDMRVHDSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILNERIQRCDKVSEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCAKLPAIAFTRCTEKAAGSYARGSSTISLQASNSVQHACVQLIRSLL
REGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLNIQETQELQICLKQVIRSLKSRAVNVS
VENNANSTALPTVSLKQEKSAPGDGYKMSVHGRENLCSPVAFISKEGEDGRCQDNSFTGR
NSAWEQDCKDSSKNSKSLTSTDCLLVNIKKEPTDLITQECRCLQKSFAKEMHGKVQENRN
SGLMSGNCDVGNQGFNISIQSLNSRRSGVLENKQEAEAISPIYLSAQTSVDSPEHVYSSD
VQGRKVSPSSSSEFKEDTHRLGHLHFQTRNTEGHSRLLTQIADLKNCGSATGASEAEQLV
FCTGSSCMRKGCCKHQGVNAVGENEDRESANISRSSESTWEKSAFQYGLVSKNQEQKEMP
LDCFSFAKNQPGNQPGMQGNKDNSILLANISDTVLQNVSTKDDLSLLLKSVCLKDQEQPN
LRDLVKCDRKGQISKSSCTVKNSVSGHVPSSFENKGVMSNTALPVSPLTIRCESSEKLIV
CSKYFKRENGSEGKEEENFVRMVSEDNALTNSQLDKDLSKLSLAAYAKSVNFPSWSSQES
SMHNNTCDVKRKVKSAVRSSNDAQSNQTLCDTDSHGNKIIIILDSSDEENNITVNEERKE
INENACPEKQPLSEMQHDVTGSKSESKMPNSPLPLEDCDSQYFEFETEVDVFSVWQDTQE
YKQDGLSTSVGSSHSDGLLKDHTNEWGYDTDYVSDDAMEKETNQTGEEINTHQKETDNTE
VTNSALQEFSAKQDVKDEVKNSTDKTTVDKDLILNADLTEPRASTSSISLASKLALKKST
LSPRKNIAKSKVARTIQRSPKTTALNTTQTKKLLQSTLKKIQPGRTTPAVVPPKKARQCP
APTSTVEKLGLKKAPRKAFELSQRSLDSLAQLRSYGKVAGKVGVAQRGKLKRTAHPSLST
QINKKMLACQDLQFLKQTRLGKSVRVKNISRSSEDRSKKVSTMDTKSIKQKAKCLDEPSV
EKQGEKKPGVTFYPSVDERERITSLSVEKEAVQTTLVSSCSDSSRTKDCDVMIPRALMNS
SPCSAAVVGDAKGKPEEGCIVQPEFGMTTSKENECKPDENSDDDGLFLTQLDPVDMELCS
QDEDAENNNIATIRTEEMEIDSTESLQQNEPLTVVKCKYKDCMGKVEKIGDCCSKHSSTN
SESDHLFAKPSSLPPRKPSTTKIFSSVSSSRNAAFSKDLEDVEKQPQTLKSRASIAKPAV
LRPLSEKITPTRNQTCRTPSSSNIPQPRISNNVLQPRNTQINNASNISRGPVRAEHYSSF
LGAQQHDHNIFVKEVLKWTYEMFANSMQFGPPNYLLQSVVASVPIRFQGYNDYFNTFFPL
MMLNAFETLVQEWVENQKMKDKTYYFHLQNFCADLNTAEFIARFEESDLTKQLHPKEDDL
IFLVGQKKKDAFGEDSEVEDHLVNHVGLVRRFSRASGCLTRQMEQHIVCHLSVQTQGNLS
FFINSQMKCVVVGSLVPTQRSFKGLLLLSRSPLAKPIINPSYSDFCPRDLPVASENATFC
MNEYNEDQKRAIETAYAMVKQHPGLAKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKT
SKKNARMKQNRFLVCAPSNAAVDELMKKIIIAFKEKCQNKQEPLGNCGDIKLVRLGAERS
INSEVRAFSLDKQVEHRMKRKPTDRDQDIQKKKAALDEKLDMLSRQRAMHRCEKRESQML
DDEIGRLSKERQQLASQLKEVRGHSQKVQTDIILESDIICCTLSTSGGGLLESAFWRQGL
DPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTIKSIKAQEYGYGQSLMAR
LQRHLEEQVQNNLIRRLPVVQLTVQYRMHPDICLFPSSYVYGRTLKTDKATEENRCSSEW
PFQPYLVFDVGDGREERDKDSFSNPQEVKLVLEIIRTIKEKRKDLGLRRIGIITPYSAQK
KKIQEELDRVFRNNSPGEVDTVDAFQGREKDCIIVTCVRANSSKGSIGFLASLQRLNVTI
TRARFSLFILGRLKTLMENKDWNELIQDAQRRGAIIKTSDKSYKKDALKILKLKPTPQNP
PCQLPTKAGTTKTPLAEAASSSRKVAEPANPREASRPRELAAGPAHAVPQGSRMSQQAQG
TQVADSRRASISAPVQAAALPADKEKPRDPRLASMASRTETKGKEQDPKHSSQSAQSSRE
STLQQRLDVSSAARDQISRTEPSKKHQQTKGQCDMPSTLPSTAKQEGETRAPLPERHSKA
SSERGQCNSSKWNKDPRTSMRRTSESSSVSTDSSSAKRRRISH
NT seq
8412 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtatgtcgatggtgtacaccaagtggtcttgatgccactgaatacctgaagagc
tatgcttctaaacagttgtccccagaagatcttgaagcttccaacgatgatctctgttac
tgcttggagtgtgtggttgaataccacaaagcaagggagaaagtgccaagcttgcatcag
gttttattggaattggaaacctcccgcctcatagcccacattgaaaaatccataagagaa
gaagctggagaagatgatgagttgtttatagtagatgagaatggagagacacagctgcct
gtttatgttggcccagattttgagaataacctgagagtacctcttctagaagtgctgaaa
tacccgtatctgctgctacatgagaaagtcagtgagctttgtgtagaagtgctgtgtaga
atggaagaaagtcatacctcctttcaggtttttgagaaatatccaggaatttatctattt
ttggtacatccaaatgaagtgattcgtcgttgggccatcctaacagcaaggaatttaggg
aaggttgacagagatgattactatgacttacaggaagtgttgacttgcttgtttaaagtt
attgaattggggctttttgagagtccagatatttacagatcttcagtgattgaaaaggga
aaactcattcttctgccatcccatttatatgataataccaactacaagaactattggcta
ggtatttgtatgttgctaacagtgctggaagaacaagctatggactccttgttactgggc
ccagacaaacagaatgacttcatgcagtctatacttcacaccatggagaaagaagcagat
gatgattccactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
cttggttctaaagtatggggtcagcttattgatcccgttcaggcctttcaaacaattatc
aacagtgtgagctacaacaatgaaataaagaatatacgcaatagccttataaggacaaaa
tctgaacagaagacagactacaatgatgaaatggttacttgcagtcagattgtatatact
tataacacagaaaagcctcaaaaggatactgggtggaaaactgctatttgtccagactac
tgccccaacatgtatgaagatatgcaaacactggctaatgtgcttcagtctgatattggc
agagatatgcgtgtccatgacagcacatttctgtggttcatcccttttgttcagtcacta
atggatctcaaggacttgggtgtggcatacatagtagaggtcattcactacctctgttcg
gaaatcaaggatattctcaatgaaagaatccagcggtgtgacaaagtttctgaatttttt
ctgttgatcttggtgtcaattattgaactacacagaaacaagaagtgcctgcatttgctg
tggattagctctcaagaatgggtggaagcagtggtgagatgtgctaagcttccagcaatt
gcatttacccggtgtactgaaaaagcagctggcagctatgctagaggttcatcgacaata
tctttacaggcttctaactctgtgcagcatgcttgtgtgcagttgatacgcagccttctt
agagaaggctatcagatcggtcagcatgcactatgcaagcaatatttagacaaactcaat
ctccttctgcgaggaaatctatctttaggttggcagctgaacatccaagaaactcaggaa
ttacaaatatgtttaaagcaggttataagaagcttaaagagcagagcagtgaatgtgtct
gtagaaaacaatgcaaactctacagctttacccactgtttctttgaagcaagagaagagc
gcacctggtgatggttataagatgagtgtgcatggcagagagaacctttgttcaccagtt
gccttcatatcaaaggaaggtgaggatggacgttgtcaagataactctttcactggcaga
aatagtgcctgggaacaagattgtaaagattcgtctaaaaactcaaaatctttgacctct
acagactgcctcttggtaaatattaaaaaggaacctacggacttgataactcaggagtgc
agatgcctgcagaaatcatttgcaaaagaaatgcatgggaaagttcaggaaaataggaat
agtggtcttatgtcagggaactgtgatgtgggtaatcagggctttaatataagtattcag
agtttgaattctagaagaagtggagtgttggaaaacaaacaggaagcggaagctatatca
ccaatatatctatctgctcaaactagtgttgattctccagagcatgtttacagctcagat
gtacagggaagaaaagtgtctcctagttcctcttcagagtttaaagaagatacgcatagg
cttgggcatcttcattttcagacacgcaatactgaagggcactctagactattaactcaa
atagcggatctgaaaaactgtggttctgcaacaggtgcttcagaagcagagcaacttgtg
ttttgcactggcagttcatgtatgaggaaaggctgttgcaagcatcagggagtaaacgct
gtgggtgaaaatgaagacagagaatcagcaaatatttcaaggagttctgaaagtacgtgg
gagaaaagtgcttttcaatacgggctggtctccaaaaaccaggaacaaaaagagatgcca
cttgactgcttcagctttgctaaaaatcaacctggaaatcaacctggcatgcagggaaac
aaagataacagtattttgcttgcaaatattagtgacaccgtgctgcagaacgtatccacc
aaagacgacttgagtttgttgttgaagtctgtctgtcttaaagaccaagagcaacctaat
ttaagagacctagttaaatgtgaccgtaaaggtcaaatttcaaagtcatcctgtacagtt
aaaaattcagtgagtggtcatgttccatctagctttgaaaataagggagttatgtccaac
actgctcttccagtcagtccactgacaatcagatgtgaatcaagtgaaaagttgatagta
tgctcaaaatatttcaagagagaaaacggttcagaggggaaggaagaggagaattttgtg
aggatggtttctgaagataatgctttaacaaattcccagctcgataaagatctcagtaaa
ttgtcattagctgcttatgccaaaagtgtcaattttccatcatggtcaagtcaggaaagt
tcaatgcataataatacatgtgatgttaaaaggaaagtgaaaagtgctgtaagatcttcc
aacgatgcccagagtaatcagactctctgtgatacagatagccatggcaataaaatcatt
ataattttagactcttctgatgaagaaaacaatattactgtcaatgaggaaagaaaagaa
attaatgaaaatgcgtgtcctgaaaagcaacctttatcagaaatgcagcatgatgttaca
ggtagcaaatcagaatcaaagatgccaaactctcccttgccacttgaagactgtgactct
cagtactttgagtttgaaacagaagttgatgtcttttctgtttggcaggatactcaagaa
tataaacaagacggtctttcaacatcggttggtagcagtcattcagatggcttactgaag
gatcacacaaatgaatggggttatgatacagattatgtaagtgatgatgccatggaaaaa
gaaacaaaccagacaggggaggagataaatactcatcagaaagaaactgataatacagaa
gtaactaattcagctttgcaagaattttctgctaaacaagatgtaaaagatgaagtgaag
aactctactgacaaaactactgttgataaagacttaattctgaatgcagatttgacggaa
cccagagcttctacatccagtatctcattagcttcaaagctggcacttaagaaaagtact
ctgagcccacgtaaaaatatagctaaatctaaggtagcaagaaccattcagagaagtcct
aaaacaacagctctgaatacaacacaaactaaaaaactacttcaaagtacgttaaaaaaa
attcagcctggcaggacaacgcctgctgttgttcctccaaagaaagctcggcagtgtcct
gcaccaacatcaacagtggaaaagcttggtctgaaaaaggcaccgcgcaaagcatttgaa
ttatcccagcgctctttagatagtctagctcaattgcgtagttatggtaaagttgcaggg
aaggttggagttgctcagagggggaagcttaaacgaactgctcatccgagtttatctacg
caaattaacaaaaaaatgctagcttgccaagaccttcagtttttaaagcaaacaaggctc
ggcaaaagtgttcgagtgaaaaatatttcgaggagttctgaggatagaagcaaaaaagtt
agcacaatggatacaaagtctatcaaacaaaaggctaaatgtcttgatgagccatctgtt
gaaaagcaaggagaaaaaaaaccaggagtgactttttatccatctgtcgatgagagagaa
cgtatcactagcctctctgtggagaaggaggctgtgcaaactacacttgtctctagttgt
tcagactcaagcagaacaaaagactgtgatgtaatgattcctcgtgcgcttatgaattca
agtccatgttctgctgcagttgttggagatgctaaaggtaaaccagaagaaggttgcatc
gtccagcctgaatttgggatgacaacttcaaaagaaaatgagtgcaaaccagatgaaaac
agtgatgatgatggtttatttttaactcagttagatcctgtggatatggaattgtgttca
caggatgaagatgctgaaaacaataatatagctactataagaacagaggaaatggaaata
gatagcactgaaagccttcagcagaatgagcccttgactgttgtgaaatgtaagtacaaa
gactgtatgggaaaagtggaaaaaataggagactgctgtagcaagcattcgtccaccaat
tcagaatcagatcacctgtttgctaagccttcttccctgccaccaagaaaaccttccact
actaaaattttcagttcagtaagttcttcacgaaatgcagccttcagcaaagatctcgaa
gatgttgaaaaacaaccacaaactttaaaaagcagagctagcattgcaaaacctgctgtg
ttgagaccactgagtgaaaagattacaccaacaagaaatcaaacatgcaggactccaagt
tccagtaatattcctcaacctcgtatttctaataatgttctccagccacgaaatacacag
atcaacaatgcttcaaatatttccagagggcctgtccgagcagagcactattcttctttt
cttggcgctcagcagcacgatcataatatttttgttaaggaggttctgaaatggacttat
gaaatgtttgcaaactccatgcagtttggacctccaaattatctcctgcaatctgtagtc
gcctctgttcccatcagatttcagggatacaatgactattttaatacgtttttccccttg
atgatgctaaatgcctttgaaacactggtacaggagtgggtagaaaaccagaagatgaaa
gacaagacttactacttccacttacagaacttctgtgcggatttgaatacggcagagttt
atagctcgttttgaggaaagtgatttgacaaagcagctccatccgaaggaggatgactta
atctttctggtgggccagaaaaagaaagatgcctttggggaagacagtgaggtggaggac
cacctggtgaatcatgttggtcttgtgaggcgattttctcgtgcatctggctgcttaacc
agacaaatggagcaacatattgtctgtcatctttctgtacaaactcaaggaaatttgtca
ttcttcataaatagtcaaatgaagtgtgtggtggttggttccttagtgcccacacagcga
tcattcaaaggtctgctactactgagcaggagtcccctggctaaacccatcataaatcca
agctacagtgatttctgtccaagagatttgcctgtagcttcagaaaatgctacgttttgt
atgaatgaatacaacgaagatcaaaagagagccattgaaacagcttatgccatggtaaag
caacatccagggcttgccaaaatctgtcttatccatggaccacctggaactgggaagtcc
aaaactatagttggacttttgtctcgtgttttgagagagaacactaggaatgagaaaaca
agtaaaaaaaatgccaggatgaagcagaaccgttttctggtttgtgcaccatccaatgct
gcggttgatgaactcatgaaaaagatcatcattgcatttaaggaaaaatgccaaaacaaa
caggagcctttgggaaactgtggtgatatcaaattagtgcgactgggtgctgaaagatca
atcaacagtgaagtccgggcttttagcctggataagcaagttgaacatagaatgaaacga
aagccaactgaccgggaccaggatattcagaagaaaaaagcagctctggatgagaagctg
gacatgctttctcgtcagcgtgccatgcacagatgtgaaaagagggagagtcaaatgcta
gatgatgaaattggcagactttcaaaggagagacagcaacttgcttctcaactgaaagag
gttcggggacactctcagaaggtacagacagatatcatcttggagtctgatataatctgc
tgcacactgagcacaagcggaggaggtctgctggaatctgctttttggcgacaaggactc
gatcctttcagctgtgtcattgtggacgaggcagggcagtcctgtgaagttgaaacactg
attccactgattcatcgctgtaataaacttgtccttgttggagatcccaggcagctccct
cccacaataaaatcaataaaagctcaggaatatggctatggtcagtccttaatggcacgc
ctacagagacacctggaagaacaagtgcagaataatcttatacgacgtctgccagttgtg
cagctgactgtgcagtaccgaatgcaccctgacatctgccttttcccatccagttatgtt
tatggcaggactctaaagactgacaaagcaacagaagagaacagatgttcttcagagtgg
ccattccagccctatcttgtttttgatgtaggagatggccgtgaggagcgtgacaaagac
tcttttagtaatccccaagaagtgaaattggtgttagaaataattagaacaattaaagaa
aaaaggaaggatctaggtcttcgtcgcattggaataattacaccttatagtgcacagaaa
aagaaaattcaagaggaactagacagagtgttcaggaataacagcccaggagaagtggat
acagtggatgcatttcagggacgggaaaaggattgcatcatagtgacgtgtgtccgggca
aacagctccaaagggtcaattgggtttctggcaagtcttcagcgtttgaatgttacaatt
acccgagccagattcagcctcttcatccttggaagactgaaaacactaatggaaaataaa
gactggaacgagttgattcaggacgctcagagaagaggtgcaattatcaagacatcagac
aaaagctacaagaaagatgcacttaagattctgaagctcaaaccaacaccacagaatccc
ccatgccagcttcccaccaaagcggggacaacgaaaactcctctggcagaggctgcttct
tctagtaggaaggtggctgagcctgcaaatccaagggaggccagcagaccacgggaactt
gctgctggtcctgcccatgcagtgccacagggaagcagaatgtcccagcaggcacaggga
actcaggttgcagactcccggagagccagcatctctgcaccagtgcaggctgcagcactc
cctgctgataaagagaaaccgcgggacccaaggctggcaagtatggccagcagaactgaa
acgaaagggaaggagcaggacccaaaacacagcagtcagtcagcccagagcagtcgagaa
tcaacgctgcagcagcgtctggatgtgtcctcagctgccagggatcagatttccagaacg
gaaccttctaagaagcaccaacaaacaaaggggcagtgtgacatgccttccacgttgcct
tccacagctaaacaagagggtgagacaagagctccattgccagaacgccattcaaaagcc
agcagtgaaagaggtcagtgtaatagcagtaagtggaacaaagacccacgtacttcaatg
aggagaacatcggagtcgtcatcagtgagcacagactccagcagtgccaagcgaagaagg
atctctcactga
DBGET
integrated database retrieval system
